X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=catchallcommand.h;h=32be8b63d2ce751391ae5ebbc6154be221b77c9d;hp=a1c9d0e2e8b1d6806a7c84c45419f297110f5320;hb=615301e57c25e241356a9c2380648d117709458d;hpb=65f2be9d8f9b4cf72b4aafd800fdd11ad26435fd

diff --git a/catchallcommand.h b/catchallcommand.h
index a1c9d0e..32be8b6 100644
--- a/catchallcommand.h
+++ b/catchallcommand.h
@@ -31,7 +31,11 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "catchall";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "Bunge J, Woodard L, Bohning D, Foster JA, Connolly S, Allen HK (2012). Estimating population diversity with CatchAll. Bioinformatics  28:1045.\nhttp://www.northeastern.edu/catchall/index.html\nhttp://www.mothur.org/wiki/Catchall"; }
+	string getDescription()		{ return "estimate number of species"; }
 	
 	int execute(); 
 	void help() { m->mothurOut(getHelpString()); }