X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=catchallcommand.h;h=32be8b63d2ce751391ae5ebbc6154be221b77c9d;hp=44ed3ef162b0a82465c1662f2f19e73d43468f86;hb=615301e57c25e241356a9c2380648d117709458d;hpb=5c5c0428f6d548c28a8b903ac80efed4f92d59db diff --git a/catchallcommand.h b/catchallcommand.h index 44ed3ef..32be8b6 100644 --- a/catchallcommand.h +++ b/catchallcommand.h @@ -31,8 +31,9 @@ public: vector setParameters(); string getCommandName() { return "catchall"; } string getCommandCategory() { return "OTU-Based Approaches"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Bunge J, Woodard L, Bohning D, Foster JA, Connolly S, Allen HK (2012). Estimating population diversity with CatchAll. Bioinformatics 28:1045.\nhttp://www.northeastern.edu/catchall/index.html\nhttp://www.mothur.org/wiki/Catchall"; } string getDescription() { return "estimate number of species"; }