X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=catchallcommand.h;h=32be8b63d2ce751391ae5ebbc6154be221b77c9d;hp=238dfb608bb412a311f184d8df2f5dd4d4db9ab9;hb=615301e57c25e241356a9c2380648d117709458d;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf

diff --git a/catchallcommand.h b/catchallcommand.h
index 238dfb6..32be8b6 100644
--- a/catchallcommand.h
+++ b/catchallcommand.h
@@ -31,8 +31,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "catchall";			}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
-	string getCitation() { return "Bunge, J. (2011). Estimating the number of species with CatchAll. Forthcoming in Proceedings of the Pacific Symposium on Biocomputing 2011.\nhttp://www.northeastern.edu/catchall/index.html http://www.mothur.org/wiki/Catchall"; }
+    string getOutputPattern(string);	
+	string getCitation() { return "Bunge J, Woodard L, Bohning D, Foster JA, Connolly S, Allen HK (2012). Estimating population diversity with CatchAll. Bioinformatics  28:1045.\nhttp://www.northeastern.edu/catchall/index.html\nhttp://www.mothur.org/wiki/Catchall"; }
 	string getDescription()		{ return "estimate number of species"; }
 	
 	int execute();