X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=blastdb.hpp;h=50a8379b68ec89130b7df1892aab4538daa77a1e;hp=0f8fccd7f19507737642e218e4a149c5f4a60e0b;hb=1a20e24ee786195ab0e1cccd4f5aede7a88f3f4e;hpb=9ada98592a54c82d08f3d46c9b1d8c3e472a922d

diff --git a/blastdb.hpp b/blastdb.hpp
index 0f8fccd..50a8379 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -12,31 +12,34 @@
  */
 
 #include "mothur.h"
-#include "globaldata.hpp"
 
 class BlastDB : public Database {
 
 public:
-	BlastDB(float, float, float, float);
+	BlastDB(string, float, float, float, float, string, int);
+	BlastDB(string, int);
 	~BlastDB();
 	
 	void generateDB();
 	void addSequence(Sequence);
 	vector<int> findClosestSequences(Sequence*, int);
-	vector<int> findClosestMegaBlast(Sequence*, int);
-
+	vector<int> findClosestMegaBlast(Sequence*, int, int);
+	
 private:
+	
+	string scrubName(string);
+	
 	string dbFileName;
 	string queryFileName;
 	string blastFileName;
 	string path;
 	
-	int count;
+	int count, threadID;
 	float gapOpen;
 	float gapExtend;
 	float match;
 	float misMatch;
-	GlobalData* globaldata;
+	
 };
 
 #endif