X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=anosimcommand.cpp;h=bd4e6b0683886bd0012e6b222a12592c8e594107;hp=1b6afe35b760ed140b6747d02a41ce5d4424fca1;hb=49d2b7459c5027557564b21e9487dadafbbbdc96;hpb=ee8403d4eb5760187d62b42a9cf4272de8fc0ec4

diff --git a/anosimcommand.cpp b/anosimcommand.cpp
index 1b6afe3..bd4e6b0 100644
--- a/anosimcommand.cpp
+++ b/anosimcommand.cpp
@@ -49,7 +49,26 @@ string AnosimCommand::getHelpString(){
 		exit(1);
 	}
 }
-
+//**********************************************************************************************************************
+string AnosimCommand::getOutputFileNameTag(string type, string inputName=""){	
+	try {
+        string outputFileName = "";
+		map<string, vector<string> >::iterator it;
+        
+        //is this a type this command creates
+        it = outputTypes.find(type);
+        if (it == outputTypes.end()) {  m->mothurOut("[ERROR]: this command doesn't create a " + type + " output file.\n"); }
+        else {
+            if (type == "anosim") {  outputFileName =  "anosim"; }
+            else { m->mothurOut("[ERROR]: No definition for type " + type + " output file tag.\n"); m->control_pressed = true;  }
+        }
+        return outputFileName;
+	}
+	catch(exception& e) {
+		m->errorOut(e, "AnosimCommand", "getOutputFileNameTag");
+		exit(1);
+	}
+}
 //**********************************************************************************************************************
 AnosimCommand::AnosimCommand(){	
 	try {
@@ -188,7 +207,7 @@ int AnosimCommand::execute(){
 		
 		//create a new filename
 		ofstream ANOSIMFile;
-		string ANOSIMFileName = outputDir + m->getRootName(m->getSimpleName(phylipFileName))  + "anosim";				
+		string ANOSIMFileName = outputDir + m->getRootName(m->getSimpleName(phylipFileName)) + getOutputFileNameTag("anosim");				
 		m->openOutputFile(ANOSIMFileName, ANOSIMFile);
 		outputNames.push_back(ANOSIMFileName); outputTypes["anosim"].push_back(ANOSIMFileName);
 		m->mothurOut("\ncomparison\tR-value\tP-value\n");