X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=anosimcommand.cpp;h=50b6f283d8d58de276b0a08f573894628a98295f;hp=c5cb4d60c751d6614b82cd961c29d9e645fcbaa8;hb=ae57e166b2ed7b475ec3f466106bd76fabadd063;hpb=55386dddad84cc1140d736cabaf4dd0ae16f2e01

diff --git a/anosimcommand.cpp b/anosimcommand.cpp
index c5cb4d6..50b6f28 100644
--- a/anosimcommand.cpp
+++ b/anosimcommand.cpp
@@ -176,10 +176,16 @@ int AnosimCommand::execute(){
 		//link designMap to rows/columns in distance matrix
 		map<string, vector<int> > origGroupSampleMap;
 		for(int i=0;i<sampleNames.size();i++){
-			origGroupSampleMap[designMap->getGroup(sampleNames[i])].push_back(i);
+			string group = designMap->getGroup(sampleNames[i]);
+			
+			if (group == "not found") {
+				m->mothurOut("[ERROR]: " + sampleNames[i] + " is not in your design file, please correct."); m->mothurOutEndLine(); m->control_pressed = true;
+			}else { origGroupSampleMap[group].push_back(i); }
 		}
 		int numGroups = origGroupSampleMap.size();
 		
+		if (m->control_pressed) { delete designMap; return 0; }
+		
 		//create a new filename
 		ofstream ANOSIMFile;
 		string ANOSIMFileName = outputDir + m->getRootName(m->getSimpleName(phylipFileName))  + "anosim";