X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=amovacommand.cpp;h=492a096f76cc1de12514731f66514e8d632c0c5f;hp=a78aafcbd92a344420c29598f6cac4456404a890;hb=a8e2df1b96a57f5f29576b08361b86a96a8eff4f;hpb=1a5c2356c1b955c6ec024b2baf9f46377ee7c72e

diff --git a/amovacommand.cpp b/amovacommand.cpp
index a78aafc..492a096 100644
--- a/amovacommand.cpp
+++ b/amovacommand.cpp
@@ -307,7 +307,7 @@ double AmovaCommand::runAMOVA(ofstream& AMOVAFile, map<string, vector<int> > gro
 		for(int i=0;i<iters;i++){
 			map<string, vector<int> > randomizedGroup = getRandomizedGroups(groupSampleMap);
 			double ssWithinRand = calcSSWithin(randomizedGroup);
-			if(ssWithinRand < ssWithinOrig){	counter++;	}
+			if(ssWithinRand <= ssWithinOrig){	counter++;	}
 		}
 		
 		double pValue = (double)counter / (double) iters;