X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=alignmentdb.h;h=537af8d21548e118a8d7470133be1acd4aab11fb;hp=fe4e52628d477546703f44624d6854a0f6699ea1;hb=615301e57c25e241356a9c2380648d117709458d;hpb=ef3f6d42fe720cd6d91419e5e32f8c04d8765010

diff --git a/alignmentdb.h b/alignmentdb.h
index fe4e526..537af8d 100644
--- a/alignmentdb.h
+++ b/alignmentdb.h
@@ -20,7 +20,8 @@ class AlignmentDB {
 
 public:
 
-	AlignmentDB(string, string, int, float, float, float, float);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string, string, int, float, float, float, float, int);  //reads fastafile passed in and stores sequences
+	AlignmentDB(string);
 	~AlignmentDB();
 	
 	Sequence findClosestSequence(Sequence*);
@@ -28,12 +29,13 @@ public:
 	int getLongestBase()	{  return longest;  }
 	
 private:
-	int numSeqs, longest;
-	float searchScore;
+	int numSeqs, longest, threadID;
+	string method;
 	
 	Database* search;
 	vector<Sequence> templateSequences;
 	Sequence emptySequence;
+	MothurOut* m;
 };
 
 /**************************************************************************************************/