X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=alignment.hpp;h=3a2e84de5a8e24cf744ef3544d44df9e3e5dc722;hp=9d2197f5eaa7248b9bb8490c87c804f85931d095;hb=df7e3ff9f68ef157b0328a2d353c3258c5d45d89;hpb=ccf2fedbb600a362777a11501bb56c9c7746068e

diff --git a/alignment.hpp b/alignment.hpp
index 9d2197f..3a2e84d 100644
--- a/alignment.hpp
+++ b/alignment.hpp
@@ -25,6 +25,7 @@ public:
 	Alignment();
 	virtual ~Alignment();
 	virtual void align(string, string) = 0;
+    virtual void alignPrimer(string, string) {}
 	
 	
 //	float getAlignmentScore();