X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=alignment.cpp;h=d64d8b20bb61d7a1718c5965a41729b0b6640255;hp=95e9dc2b115888a9cd38353aeb67353c1fb71806;hb=02909d6cae9963ba00dc746969a370fa8ca934fc;hpb=e7729bb337cfefcaba24549092cc89b44002af39

diff --git a/alignment.cpp b/alignment.cpp
index 95e9dc2..d64d8b2 100644
--- a/alignment.cpp
+++ b/alignment.cpp
@@ -87,6 +87,23 @@ void Alignment::traceBack(){			//	This traceback routine is used by the dynamic
 	seqBend = seqB.length() - seqBend - 1;
 
 }
+/**************************************************************************************************/
+
+Alignment::~Alignment(){
+	try {
+		for (int i = 0; i < alignment.size(); i++) {
+			for (int j = (alignment[i].size()-1); j >= 0; j--) {  alignment[i].pop_back();  }
+		}
+	}
+	catch(exception& e) {
+		cout << "Standard Error: " << e.what() << " has occurred in the Alignment class Function ~Alignment. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		exit(1);
+	}
+	catch(...) {
+		cout << "An unknown error has occurred in the Alignment class function ~Alignment. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
+		exit(1);
+	}
+}
 
 /**************************************************************************************************/