X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=alignment.cpp;h=2734c389cd0122add50ee1b3cc23cd879788ca0b;hp=25b27604533cbefa4ba1748001a45622e9712547;hb=1244c4907c07baea86b0f0676d098a29d2e95a39;hpb=ec92647e652017e0cd4ba0488a815094f88373b3

diff --git a/alignment.cpp b/alignment.cpp
index 25b2760..2734c38 100644
--- a/alignment.cpp
+++ b/alignment.cpp
@@ -31,7 +31,22 @@ Alignment::Alignment(int A) : nCols(A), nRows(A) {
 		exit(1);
 	}
 }
+/**************************************************************************************************/
+void Alignment::resize(int A) {
+	try {
+		nCols = A;
+		nRows = A;
 
+		alignment.resize(nRows);			
+		for(int i=0;i<nRows;i++){			
+			alignment[i].resize(nCols);		
+		}	
+	}
+	catch(exception& e) {
+		errorOut(e, "Alignment", "resize");
+		exit(1);
+	}
+}
 /**************************************************************************************************/
 
 void Alignment::traceBack(){			//	This traceback routine is used by the dynamic programming algorithms