X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=f3b6a09ea7e690a55a31fcbe6b9fc457fa59ca2a;hp=f670803d39b300ddc854194a429f76c406800ee3;hb=ac03f1f6c27b5bfdf2cfb6d45c3667c3e0281f51;hpb=58e640f9968ed426ac8cc0ebe3c01564ce68b4d7 diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index f670803..f3b6a09 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -20,6 +20,7 @@ A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7128B1C16B7002600723BE4 /* getdistscommand.cpp */; }; A713EBAC12DC7613000092AC /* readphylipvector.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBAB12DC7613000092AC /* readphylipvector.cpp */; }; A713EBED12DC7C5E000092AC /* nmdscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */; }; + A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */ = 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*/ = {isa = PBXBuildFile; fileRef = A73DDC3713C4BF64006AAE38 /* mothurmetastats.cpp */; }; + A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741744A175CD9B1007DF49B /* makelefsecommand.cpp */; }; A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */; }; + A747EC71181EA0F900345732 /* sracommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A747EC70181EA0F900345732 /* sracommand.cpp */; }; A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */; }; A74A9A9F148E881E00AB5E3E /* spline.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74A9A9E148E881E00AB5E3E /* spline.cpp */; }; A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */; }; @@ 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A7E9B71B12D37EC400DA6239 /* hclustercommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; lineEnding = 0; path = hclustercommand.h; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.objcpp; }; A7E9B71C12D37EC400DA6239 /* heatmap.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmap.cpp; sourceTree = SOURCE_ROOT; }; A7E9B71D12D37EC400DA6239 /* heatmap.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = heatmap.h; sourceTree = SOURCE_ROOT; }; A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = heatmapcommand.cpp; sourceTree = ""; }; @@ -1081,6 +1097,8 @@ A7E9B88012D37EC400DA6239 /* whittaker.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = whittaker.h; sourceTree = ""; }; A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifytreecommand.cpp; sourceTree = ""; }; A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifytreecommand.h; sourceTree = ""; }; + A7F24FC117EA365F0021DC9A /* classifyrfsharedcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = classifyrfsharedcommand.cpp; sourceTree = ""; }; + A7F24FC217EA365F0021DC9A /* classifyrfsharedcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = classifyrfsharedcommand.h; sourceTree = ""; }; A7F9F5CD141A5E500032F693 /* sequenceparser.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = sequenceparser.h; sourceTree = ""; }; A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sequenceparser.cpp; sourceTree = ""; }; A7FA10001302E096003860FE /* mantelcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = mantelcommand.h; sourceTree = ""; }; @@ -1187,6 +1205,8 @@ A7E9B73A12D37EC400DA6239 /* libshuff.h */, A7FC480C12D788F20055BC5C /* linearalgebra.h */, A7FC480D12D788F20055BC5C /* linearalgebra.cpp */, + A7D9378B17B15215001E90B0 /* wilcox.h */, + A7D9378917B146B5001E90B0 /* wilcox.cpp */, A7E9BA5612D39BD800DA6239 /* metastats */, A7E9B75B12D37EC400DA6239 /* mothur.cpp */, A7E9B75C12D37EC400DA6239 /* mothur.h */, @@ -1261,8 +1281,6 @@ children = ( A7386C1B1619CACB00651424 /* abstractdecisiontree.hpp */, A7386C241619E52200651424 /* abstractdecisiontree.cpp */, - A7386C1C1619CACB00651424 /* abstractrandomforest.hpp */, - A7386C26161A0F9C00651424 /* abstractrandomforest.cpp */, A7386C1D1619CACB00651424 /* decisiontree.hpp */, A7386C28161A110700651424 /* decisiontree.cpp */, A7386C1E1619CACB00651424 /* macros.h */, @@ -1336,8 +1354,8 @@ A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */, A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */, A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */, - A7386C221619CCE600651424 /* classifysharedcommand.h */, - A7386C211619CCE600651424 /* classifysharedcommand.cpp */, + A7F24FC217EA365F0021DC9A /* classifyrfsharedcommand.h */, + A7F24FC117EA365F0021DC9A /* classifyrfsharedcommand.cpp */, A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */, A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */, A7E9B69712D37EC400DA6239 /* clearcutcommand.h */, @@ -1398,8 +1416,6 @@ A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, - A70056E8156A93E300924A2D /* getotulabelscommand.h */, - A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */, A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */, @@ -1408,6 +1424,8 @@ A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */, A7E9B70112D37EC400DA6239 /* getotuscommand.h */, A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */, + A70056E8156A93E300924A2D /* getotulabelscommand.h */, + A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B70312D37EC400DA6239 /* getrabundcommand.h */, A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */, A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */, @@ -1432,6 +1450,8 @@ A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */, A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */, A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */, + A7190B211768E0DF00A9AFA6 /* lefsecommand.h */, + A7190B201768E0DF00A9AFA6 /* lefsecommand.cpp */, A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */, A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */, A7A0671C156294810095C8C5 /* listotulabelscommand.h */, @@ -1450,6 +1470,10 @@ A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */, A7E9B74412D37EC400DA6239 /* makegroupcommand.h */, A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */, + A741744B175CD9B1007DF49B /* makelefsecommand.h */, + A741744A175CD9B1007DF49B /* makelefsecommand.cpp */, + A7E6F69C17427CF2006775E2 /* makelookupcommand.h */, + A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */, A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */, A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */, A7E9B75412D37EC400DA6239 /* mergefilecommand.h */, @@ -1516,6 +1540,8 @@ A727864312E9E28C00F86ABA /* removerarecommand.cpp */, A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */, A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */, + A7CFA42F1755400500D9ED4D /* renameseqscommand.h */, + A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */, A7E9B7CE12D37EC400DA6239 /* reversecommand.h */, A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */, A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */, @@ -1552,6 +1578,8 @@ A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */, A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */, A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */, + A747EC6F181EA0E500345732 /* sracommand.h */, + A747EC70181EA0F900345732 /* sracommand.cpp */, A7E9B85012D37EC400DA6239 /* subsamplecommand.h */, A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */, A7E9B85812D37EC400DA6239 /* summarycommand.h */, @@ -1758,6 +1786,8 @@ A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, + A77916E7176F7F7600EEFE18 /* designmap.h */, + A77916E6176F7F7600EEFE18 /* designmap.cpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, @@ -2339,9 +2369,7 @@ A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */, A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */, A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */, - A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */, A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */, - A7386C27161A0F9D00651424 /* abstractrandomforest.cpp in Sources */, A7386C29161A110800651424 /* decisiontree.cpp in Sources */, A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */, A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */, @@ -2364,6 +2392,14 @@ A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */, A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */, A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */, + A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */, + A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */, + A741744C175CD9B1007DF49B /* makelefsecommand.cpp in Sources */, + A7190B221768E0DF00A9AFA6 /* lefsecommand.cpp in Sources */, + A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */, + A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */, + A7F24FC317EA36600021DC9A /* classifyrfsharedcommand.cpp in Sources */, + A747EC71181EA0F900345732 /* sracommand.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2380,10 +2416,10 @@ "DSTROOT[sdk=*]" = TARGET_BUILD_DIR; GCC_DYNAMIC_NO_PIC = NO; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 3; + GCC_OPTIMIZATION_LEVEL = 0; "INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR; PRODUCT_NAME = mothur; - SDKROOT = macosx10.8; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Debug; @@ -2396,7 +2432,7 @@ DEPLOYMENT_LOCATION = YES; DSTROOT = TARGET_BUILD_DIR; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 3; + GCC_OPTIMIZATION_LEVEL = 0; GCC_WARN_UNUSED_VALUE = YES; PRODUCT_NAME = mothur; SDKROOT = macosx; @@ -2416,9 +2452,10 @@ GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( "MOTHUR_FILES=\"\\\"../../release\\\"\"", - "VERSION=\"\\\"1.29.2\\\"\"", - "RELEASE_DATE=\"\\\"2/12/2013\\\"\"", + "VERSION=\"\\\"1.32.0\\\"\"", + "RELEASE_DATE=\"\\\"10/31/2013\\\"\"", ); + GCC_VERSION = ""; "GCC_VERSION[arch=*]" = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; @@ -2436,7 +2473,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx; + SDKROOT = macosx10.8; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = ""; }; @@ -2452,9 +2489,10 @@ GCC_MODEL_TUNING = ""; GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( - "VERSION=\"\\\"1.30.0\\\"\"", - "RELEASE_DATE=\"\\\"4/01/2013\\\"\"", + "VERSION=\"\\\"1.32.1\\\"\"", + "RELEASE_DATE=\"\\\"10/16/2013\\\"\"", ); + GCC_VERSION = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; GCC_WARN_MISSING_PARENTHESES = YES; @@ -2474,7 +2512,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx; + SDKROOT = macosx10.8; SKIP_INSTALL = NO; }; name = Release;