X-Git-Url: https://git.donarmstrong.com/?p=mothur.git;a=blobdiff_plain;f=Mothur.xcodeproj%2Fproject.pbxproj;h=80b05db9c02288a1c91fb0085c13426774d06fc7;hp=2314b5dc1469993f1d60473d7828a4e1fda633ee;hb=d1faab5efe1c28700890bdec5b4d8e817fa1dab2;hpb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced diff --git a/Mothur.xcodeproj/project.pbxproj b/Mothur.xcodeproj/project.pbxproj index 2314b5d..80b05db 100644 --- a/Mothur.xcodeproj/project.pbxproj +++ b/Mothur.xcodeproj/project.pbxproj @@ -9,6 +9,8 @@ /* Begin PBXBuildFile section */ 219C1DE01552C4BD004209F9 /* newcommandtemplate.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */; }; 219C1DE41559BCCF004209F9 /* getcoremicrobiomecommand.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */; }; + 483C952E188F0CAD0035E7B7 /* sharedrjsd.cpp in Sources */ = {isa = PBXBuildFile; fileRef = 483C952D188F0CAD0035E7B7 /* sharedrjsd.cpp */; }; + 48E981CF189C38FB0042BE9D /* mergesfffilecommand.cpp in Sources */ = {isa = PBXBuildFile; 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fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = sffmultiplecommand.cpp; sourceTree = ""; }; A7CFA42F1755400500D9ED4D /* renameseqscommand.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = renameseqscommand.h; sourceTree = ""; }; A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = renameseqscommand.cpp; sourceTree = ""; }; + A7D395C2184FA39300A350D7 /* kmeans.h */ = {isa = PBXFileReference; lastKnownFileType = sourcecode.c.h; path = kmeans.h; sourceTree = ""; }; + A7D395C3184FA3A200A350D7 /* kmeans.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = kmeans.cpp; sourceTree = ""; }; A7D755D71535F665009BF21A /* treereader.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = treereader.h; sourceTree = ""; }; A7D755D91535F679009BF21A /* treereader.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = treereader.cpp; sourceTree = ""; }; A7D9378917B146B5001E90B0 /* wilcox.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = wilcox.cpp; sourceTree = ""; }; @@ -1175,6 +1199,7 @@ A7E9B6B112D37EC400DA6239 /* commandoptionparser.cpp */, A7E9B6B212D37EC400DA6239 /* commandoptionparser.hpp */, A7DAAFA3133A254E003956EB /* commandparameter.h */, + A7D395C1184FA34300A350D7 /* communitytype */, A7E9B6B412D37EC400DA6239 /* completelinkage.cpp */, A7E9BA4212D3960D00DA6239 /* containers */, A7E9B6B612D37EC400DA6239 /* consensus.h */, @@ -1226,8 +1251,6 @@ A7E9B77C12D37EC400DA6239 /* overlap.hpp */, A7E9B79B12D37EC400DA6239 /* progress.cpp */, A7E9B79C12D37EC400DA6239 /* progress.hpp */, - A7548FAF171440ED00B1F05A /* qFinderDMM.h */, - A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */, A77B7187173D4041002163C2 /* randomnumber.h */, A77B7186173D4041002163C2 /* randomnumber.cpp */, A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */, @@ -1315,6 +1338,21 @@ name = fortran; sourceTree = ""; }; + A7D395C1184FA34300A350D7 /* communitytype */ = { + isa = PBXGroup; + children = ( + A7132EAE184E76EB00AAA402 /* communitytype.h */, + A7132EB2184E792700AAA402 /* communitytype.cpp */, + A7D395C2184FA39300A350D7 /* kmeans.h */, + A7D395C3184FA3A200A350D7 /* kmeans.cpp */, + A7B093BE18579EF600843CD1 /* pam.h */, + A7B093BF18579F0400843CD1 /* pam.cpp */, + A7548FAF171440ED00B1F05A /* qFinderDMM.h */, + A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */, + ); + name = communitytype; + sourceTree = ""; + }; A7E9BA3812D3956100DA6239 /* commands */ = { isa = PBXGroup; children = ( @@ -1477,6 +1515,8 @@ A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */, A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */, A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */, + 48E981CD189C38E60042BE9D /* mergesfffilecommand.h */, + 48E981CE189C38FB0042BE9D /* mergesfffilecommand.cpp */, A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */, A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */, A7E9B75812D37EC400DA6239 /* metastatscommand.h */, @@ -1575,6 +1615,8 @@ A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */, A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */, A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */, + A747EC6F181EA0E500345732 /* sracommand.h */, + A747EC70181EA0F900345732 /* sracommand.cpp */, A7E9B85012D37EC400DA6239 /* subsamplecommand.h */, A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */, A7E9B85812D37EC400DA6239 /* summarycommand.h */, @@ -1678,7 +1720,10 @@ A7E9B7E612D37EC400DA6239 /* shannon.h */, A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */, A7E9B7E812D37EC400DA6239 /* shannoneven.h */, + A7A09B0E18773BF700FAA081 /* shannonrange.h */, + A7A09B0F18773C0E00FAA081 /* shannonrange.cpp */, A7E9B7E912D37EC400DA6239 /* sharedace.cpp */, + A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */, A7E9B7EA12D37EC400DA6239 /* sharedace.h */, A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */, A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */, @@ -1686,7 +1731,6 @@ A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */, A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */, A7E9B7F112D37EC400DA6239 /* sharedchao1.h */, - A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */, A7E9B7F512D37EC400DA6239 /* sharedjabund.h */, A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */, A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */, @@ -1694,6 +1738,10 @@ A7E9B7F912D37EC400DA6239 /* sharedjclass.h */, A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */, A7E9B7FB12D37EC400DA6239 /* sharedjest.h */, + A7222D711856276C0055A993 /* sharedjsd.h */, + A7222D721856277C0055A993 /* sharedjsd.cpp */, + 483C952C188F0C960035E7B7 /* sharedrjsd.h */, + 483C952D188F0CAD0035E7B7 /* sharedrjsd.cpp */, A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */, A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */, A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */, @@ -2059,6 +2107,7 @@ A7E9B89712D37EC400DA6239 /* chimerabellerophoncommand.cpp in Sources */, A7E9B89812D37EC400DA6239 /* chimeraccodecommand.cpp in Sources */, A7E9B89912D37EC400DA6239 /* chimeracheckcommand.cpp in Sources */, + 48E981CF189C38FB0042BE9D /* mergesfffilecommand.cpp in Sources */, A7E9B89A12D37EC400DA6239 /* chimeracheckrdp.cpp in Sources */, A7E9B89B12D37EC400DA6239 /* chimerapintailcommand.cpp in Sources */, A7E9B89C12D37EC400DA6239 /* chimerarealigner.cpp in Sources */, @@ -2220,6 +2269,7 @@ A7E9B94112D37EC400DA6239 /* setlogfilecommand.cpp in Sources */, A7E9B94212D37EC400DA6239 /* sffinfocommand.cpp in Sources */, A7E9B94312D37EC400DA6239 /* shannon.cpp in Sources */, + 483C952E188F0CAD0035E7B7 /* sharedrjsd.cpp in Sources */, A7E9B94412D37EC400DA6239 /* shannoneven.cpp in Sources */, A7E9B94512D37EC400DA6239 /* sharedace.cpp in Sources */, A7E9B94612D37EC400DA6239 /* sharedanderbergs.cpp in Sources */, @@ -2394,6 +2444,12 @@ A77916E8176F7F7600EEFE18 /* designmap.cpp in Sources */, A7D9378A17B146B5001E90B0 /* wilcox.cpp in Sources */, A7F24FC317EA36600021DC9A /* classifyrfsharedcommand.cpp in Sources */, + A747EC71181EA0F900345732 /* sracommand.cpp in Sources */, + A7132EB3184E792700AAA402 /* communitytype.cpp in Sources */, + A7D395C4184FA3A200A350D7 /* kmeans.cpp in Sources */, + A7222D731856277C0055A993 /* sharedjsd.cpp in Sources */, + A7B093C018579F0400843CD1 /* pam.cpp in Sources */, + A7A09B1018773C0E00FAA081 /* shannonrange.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2445,9 +2501,9 @@ GCC_ENABLE_SSE42_EXTENSIONS = NO; GCC_OPTIMIZATION_LEVEL = 3; GCC_PREPROCESSOR_DEFINITIONS = ( - "MOTHUR_FILES=\"\\\"../../release\\\"\"", - "VERSION=\"\\\"1.31.0\\\"\"", - "RELEASE_DATE=\"\\\"5/24/2013\\\"\"", + "MOTHUR_FILES=\"\\\"/Users/sarahwestcott/desktop/release\\\"\"", + "VERSION=\"\\\"1.33.0\\\"\"", + "RELEASE_DATE=\"\\\"2/7/2014\\\"\"", ); GCC_VERSION = ""; "GCC_VERSION[arch=*]" = "";