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lastKnownFileType = sourcecode.c.h; path = getotuscommand.h; sourceTree = ""; }; - A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrabundcommand.cpp; sourceTree = ""; }; + A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = getrabundcommand.cpp; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.cpp; }; A7E9B70312D37EC400DA6239 /* getrabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrabundcommand.h; sourceTree = ""; }; A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getrelabundcommand.cpp; sourceTree = ""; }; A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getrelabundcommand.h; sourceTree = ""; }; - A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getsabundcommand.cpp; sourceTree = ""; }; + A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = getsabundcommand.cpp; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.cpp; }; A7E9B70712D37EC400DA6239 /* getsabundcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getsabundcommand.h; sourceTree = ""; }; A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = getseqscommand.cpp; sourceTree = ""; }; A7E9B70912D37EC400DA6239 /* getseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = getseqscommand.h; sourceTree = ""; }; @@ -689,13 +771,13 @@ A7E9B73A12D37EC400DA6239 /* libshuff.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuff.h; sourceTree = SOURCE_ROOT; }; A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = libshuffcommand.cpp; sourceTree = ""; }; A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = libshuffcommand.h; sourceTree = ""; }; - A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listseqscommand.cpp; sourceTree = ""; }; + A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = listseqscommand.cpp; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.cpp; }; A7E9B73E12D37EC400DA6239 /* listseqscommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = listseqscommand.h; sourceTree = ""; }; A7E9B73F12D37EC400DA6239 /* listvector.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = listvector.cpp; sourceTree = ""; }; A7E9B74012D37EC400DA6239 /* listvector.hpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.h; path = listvector.hpp; sourceTree = ""; }; A7E9B74112D37EC400DA6239 /* logsd.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = logsd.cpp; sourceTree = ""; }; A7E9B74212D37EC400DA6239 /* logsd.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = logsd.h; sourceTree = ""; }; - A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = makegroupcommand.cpp; sourceTree = ""; }; + A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; lineEnding = 0; path = makegroupcommand.cpp; sourceTree = ""; xcLanguageSpecificationIdentifier = xcode.lang.cpp; }; A7E9B74412D37EC400DA6239 /* makegroupcommand.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = makegroupcommand.h; sourceTree = ""; }; A7E9B74512D37EC400DA6239 /* maligner.cpp */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.cpp.cpp; path = maligner.cpp; sourceTree = ""; }; A7E9B74612D37EC400DA6239 /* maligner.h */ = {isa = PBXFileReference; fileEncoding = 4; lastKnownFileType = sourcecode.c.h; path = maligner.h; sourceTree = ""; }; @@ -1061,6 +1143,8 @@ A7A61F1A130035C800E05B6B /* LICENSE */, A70332B512D3A13400761E33 /* makefile */, A7E9B65912D37EC300DA6239 /* averagelinkage.cpp */, + A77B718A173D40E4002163C2 /* calcsparcc.h */, + A77B7189173D40E4002163C2 /* calcsparcc.cpp */, A7E9BA4F12D398D700DA6239 /* clearcut */, A7E9B69812D37EC400DA6239 /* cluster.cpp */, A7E9B69912D37EC400DA6239 /* cluster.hpp */, @@ -1128,7 +1212,12 @@ A7E9B77C12D37EC400DA6239 /* overlap.hpp */, A7E9B79B12D37EC400DA6239 /* progress.cpp */, A7E9B79C12D37EC400DA6239 /* progress.hpp */, + A7548FAF171440ED00B1F05A /* qFinderDMM.h */, + A7548FAE171440EC00B1F05A /* qFinderDMM.cpp */, + A77B7187173D4041002163C2 /* randomnumber.h */, + A77B7186173D4041002163C2 /* randomnumber.cpp */, A7E9B7A512D37EC400DA6239 /* rarecalc.cpp */, + A7386C191619C9FB00651424 /* randomforest */, A7E9B7A612D37EC400DA6239 /* rarecalc.h */, A7E9B7A712D37EC400DA6239 /* raredisplay.cpp */, A7E9B7A812D37EC400DA6239 /* raredisplay.h */, @@ -1170,6 +1259,28 @@ name = Products; sourceTree = ""; }; + A7386C191619C9FB00651424 /* randomforest */ = { + isa = PBXGroup; + children = ( + A7386C1B1619CACB00651424 /* abstractdecisiontree.hpp */, + A7386C241619E52200651424 /* abstractdecisiontree.cpp */, + A7386C1D1619CACB00651424 /* decisiontree.hpp */, + A7386C28161A110700651424 /* decisiontree.cpp */, + A7386C1E1619CACB00651424 /* macros.h */, + A7386C1F1619CACB00651424 /* randomforest.hpp */, + A77E1937161B201E00DB1A2A /* randomforest.cpp */, + A7386C201619CACB00651424 /* rftreenode.hpp */, + A77E193A161B289600DB1A2A /* rftreenode.cpp */, + 83F25B0A163B031200ABE73D /* forest.cpp */, + 83F25B0B163B031200ABE73D /* forest.h */, + 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */, + 834D9D571656D7C400E7FAB9 /* regularizedrandomforest.h */, + 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */, + 834D9D5B1656DEC700E7FAB9 /* regularizeddecisiontree.h */, + ); + name = randomforest; + sourceTree = ""; + }; A7D161E7149F7F50000523E8 /* fortran */ = { isa = PBXGroup; children = ( @@ -1226,6 +1337,8 @@ A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */, A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */, A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */, + A7386C221619CCE600651424 /* classifysharedcommand.h */, + A7386C211619CCE600651424 /* classifysharedcommand.cpp */, A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */, A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */, A7E9B69712D37EC400DA6239 /* clearcutcommand.h */, @@ -1268,18 +1381,24 @@ A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */, A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */, A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */, + A79EEF8816971D640006DEC1 /* filtersharedcommand.h */, + A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */, A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */, A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */, 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */, 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */, A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */, A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */, + A7128B1A16B7001200723BE4 /* getdistscommand.h */, + A7128B1C16B7002600723BE4 /* getdistscommand.cpp */, A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */, A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */, A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */, A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */, A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */, A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, + A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, + A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, A70056E8156A93E300924A2D /* getotulabelscommand.h */, A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, @@ -1312,6 +1431,8 @@ A75790581301749D00A30DAB /* homovacommand.cpp */, A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */, A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */, + A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */, + A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */, A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */, A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */, A7A0671C156294810095C8C5 /* listotulabelscommand.h */, @@ -1330,12 +1451,16 @@ A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */, A7E9B74412D37EC400DA6239 /* makegroupcommand.h */, A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */, + A7E6F69C17427CF2006775E2 /* makelookupcommand.h */, + A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */, A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */, A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */, A7E9B75412D37EC400DA6239 /* mergefilecommand.h */, A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */, A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */, A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */, + A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */, + A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */, A7E9B75812D37EC400DA6239 /* metastatscommand.h */, A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */, A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */, @@ -1372,12 +1497,16 @@ A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */, A7E9B79812D37EC400DA6239 /* preclustercommand.h */, A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */, + A74C06E616A9C097008390A3 /* primerdesigncommand.h */, + A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */, A7E9B7A212D37EC400DA6239 /* quitcommand.h */, A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */, A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */, A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */, A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */, A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */, + A7B0231716B8245D006BA09E /* removedistscommand.h */, + A7B0231416B8244B006BA09E /* removedistscommand.cpp */, A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */, A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */, A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */, @@ -1390,6 +1519,8 @@ A727864312E9E28C00F86ABA /* removerarecommand.cpp */, A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */, A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */, + A7CFA42F1755400500D9ED4D /* renameseqscommand.h */, + A7CFA4301755401800D9ED4D /* renameseqscommand.cpp */, A7E9B7CE12D37EC400DA6239 /* reversecommand.h */, A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */, A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */, @@ -1410,6 +1541,8 @@ A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */, A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */, A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */, + A7C7DAB615DA75760059B0CF /* sffmultiplecommand.h */, + A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */, A7E9B7F312D37EC400DA6239 /* sharedcommand.h */, A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */, A7E9B82812D37EC400DA6239 /* shhhercommand.h */, @@ -1418,6 +1551,8 @@ A774101314695AF60098E6AC /* shhhseqscommand.cpp */, A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */, A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */, + A77B7183173D222F002163C2 /* sparcccommand.h */, + A77B7184173D2240002163C2 /* sparcccommand.cpp */, A7E9B84012D37EC400DA6239 /* splitabundcommand.h */, A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */, A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */, @@ -1470,8 +1605,6 @@ A7E9B67112D37EC400DA6239 /* canberra.h */, A7E9B67612D37EC400DA6239 /* chao1.cpp */, A7E9B67712D37EC400DA6239 /* chao1.h */, - A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */, - A7E9B6A512D37EC400DA6239 /* cmdargs.h */, A7E9B6BB12D37EC400DA6239 /* coverage.cpp */, A7E9B6BC12D37EC400DA6239 /* coverage.h */, A7E9B6CA12D37EC400DA6239 /* dist.h */, @@ -1627,11 +1760,11 @@ A7E9B66512D37EC400DA6239 /* blastdb.hpp */, A74D59A6159A1E3600043046 /* counttable.h */, A74D59A3159A1E2000043046 /* counttable.cpp */, - A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, + A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, A7E9B6DF12D37EC400DA6239 /* fastamap.h */, A7E9B6E812D37EC400DA6239 /* flowdata.h */, @@ -1730,10 +1863,18 @@ A7E9BA4B12D3966900DA6239 /* classifier */ = { isa = PBXGroup; children = ( - A7E9B65A12D37EC300DA6239 /* bayesian.cpp */, + A721AB67161C570F009860A1 /* alignnode.h */, + A721AB66161C570F009860A1 /* alignnode.cpp */, + A721AB69161C570F009860A1 /* aligntree.h */, + A721AB68161C570F009860A1 /* aligntree.cpp */, A7E9B65B12D37EC300DA6239 /* bayesian.h */, + A7E9B65A12D37EC300DA6239 /* bayesian.cpp */, A7E9B68E12D37EC400DA6239 /* classify.cpp */, A7E9B68F12D37EC400DA6239 /* classify.h */, + A721AB6E161C572A009860A1 /* kmernode.h */, + A721AB6D161C572A009860A1 /* kmernode.cpp */, + A721AB70161C572A009860A1 /* kmertree.h */, + A721AB6F161C572A009860A1 /* kmertree.cpp */, A7E9B73812D37EC400DA6239 /* knn.h */, A7E9B73712D37EC400DA6239 /* knn.cpp */, A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */, @@ -1742,6 +1883,8 @@ A7E9B79012D37EC400DA6239 /* phylotree.h */, A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */, A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */, + A721AB74161C573B009860A1 /* taxonomynode.h */, + A721AB73161C573B009860A1 /* taxonomynode.cpp */, ); name = classifier; sourceTree = ""; @@ -1751,6 +1894,8 @@ children = ( A7E9B69412D37EC400DA6239 /* clearcut.cpp */, A7E9B69512D37EC400DA6239 /* clearcut.h */, + A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */, + A7E9B6A512D37EC400DA6239 /* cmdargs.h */, A7E9B6B312D37EC400DA6239 /* common.h */, A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */, A7E9B6D012D37EC400DA6239 /* distclearcut.h */, @@ -1843,7 +1988,7 @@ 08FB7793FE84155DC02AAC07 /* Project object */ = { isa = PBXProject; attributes = { - LastUpgradeCheck = 0420; + LastUpgradeCheck = 0460; ORGANIZATIONNAME = "Schloss Lab"; }; buildConfigurationList = 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */; @@ -2198,6 +2343,33 @@ A74D59A4159A1E2000043046 /* counttable.cpp in Sources */, A7E0243D15B4520A00A5F046 /* sparsedistancematrix.cpp in Sources */, A741FAD215D1688E0067BCC5 /* sequencecountparser.cpp in Sources */, + A7C7DAB915DA758B0059B0CF /* sffmultiplecommand.cpp in Sources */, + A7386C231619CCE600651424 /* classifysharedcommand.cpp in Sources */, + A7386C251619E52300651424 /* abstractdecisiontree.cpp in Sources */, + A7386C29161A110800651424 /* decisiontree.cpp in Sources */, + A77E1938161B201E00DB1A2A /* randomforest.cpp in Sources */, + A77E193B161B289600DB1A2A /* rftreenode.cpp in Sources */, + A721AB6A161C570F009860A1 /* alignnode.cpp in Sources */, + A721AB6B161C570F009860A1 /* aligntree.cpp in Sources */, + A721AB71161C572A009860A1 /* kmernode.cpp in Sources */, + A721AB72161C572A009860A1 /* kmertree.cpp in Sources */, + A721AB77161C573B009860A1 /* taxonomynode.cpp in Sources */, + 83F25B0C163B031200ABE73D /* forest.cpp in Sources */, + 834D9D581656D7C400E7FAB9 /* regularizedrandomforest.cpp in Sources */, + 834D9D5C1656DEC800E7FAB9 /* regularizeddecisiontree.cpp in Sources */, + A7496D2E167B531B00CC7D7C /* kruskalwalliscommand.cpp in Sources */, + A79EEF8616971D4A0006DEC1 /* filtersharedcommand.cpp in Sources */, + A74C06E916A9C0A9008390A3 /* primerdesigncommand.cpp in Sources */, + A7128B1D16B7002A00723BE4 /* getdistscommand.cpp in Sources */, + A7B0231516B8244C006BA09E /* removedistscommand.cpp in Sources */, + A799314B16CBD0CD0017E888 /* mergetaxsummarycommand.cpp in Sources */, + A7548FAD17142EBC00B1F05A /* getmetacommunitycommand.cpp in Sources */, + A7548FB0171440ED00B1F05A /* qFinderDMM.cpp in Sources */, + A77B7185173D2240002163C2 /* sparcccommand.cpp in Sources */, + A77B7188173D4042002163C2 /* randomnumber.cpp in Sources */, + A77B718B173D40E5002163C2 /* calcsparcc.cpp in Sources */, + A7E6F69E17427D06006775E2 /* makelookupcommand.cpp in Sources */, + A7CFA4311755401800D9ED4D /* renameseqscommand.cpp in Sources */, ); runOnlyForDeploymentPostprocessing = 0; }; @@ -2210,11 +2382,14 @@ ALWAYS_SEARCH_USER_PATHS = NO; COPY_PHASE_STRIP = NO; DEPLOYMENT_LOCATION = YES; + DSTROOT = TARGET_BUILD_DIR; + "DSTROOT[sdk=*]" = TARGET_BUILD_DIR; GCC_DYNAMIC_NO_PIC = NO; GCC_MODEL_TUNING = G5; - GCC_OPTIMIZATION_LEVEL = 0; + GCC_OPTIMIZATION_LEVEL = 3; + "INSTALL_PATH[sdk=*]" = TARGET_BUILD_DIR; PRODUCT_NAME = mothur; - SDKROOT = macosx10.6; + SDKROOT = macosx10.8; SKIP_INSTALL = NO; }; name = Debug; @@ -2225,9 +2400,12 @@ ALWAYS_SEARCH_USER_PATHS = NO; DEBUG_INFORMATION_FORMAT = "dwarf-with-dsym"; DEPLOYMENT_LOCATION = YES; + DSTROOT = TARGET_BUILD_DIR; GCC_MODEL_TUNING = G5; + GCC_OPTIMIZATION_LEVEL = 3; GCC_WARN_UNUSED_VALUE = YES; PRODUCT_NAME = mothur; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Release; @@ -2241,11 +2419,11 @@ GCC_ENABLE_SSE3_EXTENSIONS = NO; GCC_ENABLE_SSE41_EXTENSIONS = NO; GCC_ENABLE_SSE42_EXTENSIONS = NO; - GCC_OPTIMIZATION_LEVEL = 0; + GCC_OPTIMIZATION_LEVEL = s; GCC_PREPROCESSOR_DEFINITIONS = ( - "MOTHUR_FILES=\"\\\"../release\\\"\"", - "VERSION=\"\\\"1.26.0\\\"\"", - "RELEASE_DATE=\"\\\"7/9/2012\\\"\"", + "MOTHUR_FILES=\"\\\"../../release\\\"\"", + "VERSION=\"\\\"1.31.0\\\"\"", + "RELEASE_DATE=\"\\\"5/24/2013\\\"\"", ); "GCC_VERSION[arch=*]" = ""; GCC_WARN_ABOUT_MISSING_NEWLINE = YES; @@ -2264,7 +2442,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx10.6; + SDKROOT = macosx; SKIP_INSTALL = NO; USER_HEADER_SEARCH_PATHS = ""; }; @@ -2278,10 +2456,10 @@ GCC_C_LANGUAGE_STANDARD = gnu99; GCC_GENERATE_DEBUGGING_SYMBOLS = NO; GCC_MODEL_TUNING = ""; - GCC_OPTIMIZATION_LEVEL = 0; + GCC_OPTIMIZATION_LEVEL = s; GCC_PREPROCESSOR_DEFINITIONS = ( - "VERSION=\"\\\"1.26.0\\\"\"", - "RELEASE_DATE=\"\\\"7/9/2012\\\"\"", + "VERSION=\"\\\"1.31.0\\\"\"", + "RELEASE_DATE=\"\\\"5/24/2013\\\"\"", ); GCC_WARN_ABOUT_MISSING_NEWLINE = YES; GCC_WARN_ABOUT_RETURN_TYPE = YES; @@ -2302,7 +2480,7 @@ "-lncurses", "-lreadline", ); - SDKROOT = macosx10.6; + SDKROOT = macosx; SKIP_INSTALL = NO; }; name = Release; @@ -2317,7 +2495,7 @@ 1DEB928708733DD80010E9CD /* Release */, ); defaultConfigurationIsVisible = 0; - defaultConfigurationName = Release; + defaultConfigurationName = Debug; }; 1DEB928908733DD80010E9CD /* Build configuration list for PBXProject "Mothur" */ = { isa = XCConfigurationList; @@ -2326,7 +2504,7 @@ 1DEB928B08733DD80010E9CD /* Release */, ); defaultConfigurationIsVisible = 0; - defaultConfigurationName = Release; + defaultConfigurationName = Debug; }; /* End XCConfigurationList section */ };