added mothurOutJustToScreen function and changed all counter outputs to use it.

[mothur.git] / clusterfragmentscommand.cpp

diff --git a/clusterfragmentscommand.cpp b/clusterfragmentscommand.cpp
index ef199ccdf0a11efba99eaf0299ff50413b70b89f..1b8cc71706710a3c80d53f6ff2fd877d07d98103 100644 (file)
--- a/clusterfragmentscommand.cpp
+++ b/clusterfragmentscommand.cpp
@@ -262,10 +262,10 @@ int ClusterFragmentsCommand::execute(){
                                alignSeqs[i].active = 0;
                                
                        }//end if active i
-                       if(i % 100 == 0)        { m->mothurOut(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)); m->mothurOutEndLine(); }
+                       if(i % 100 == 0)        { m->mothurOutJustToScreen(toString(i) + "\t" + toString(numSeqs - count) + "\t" + toString(count)+"\n");       }
                }
                
-               if(numSeqs % 100 != 0)  { m->mothurOut(toString(numSeqs) + "\t" + toString(numSeqs - count) + "\t" + toString(count)); m->mothurOutEndLine();   }
+               if(numSeqs % 100 != 0)  { m->mothurOutJustToScreen(toString(numSeqs) + "\t" + toString(numSeqs - count) + "\t" + toString(count)+"\n"); }
        
                
                string fileroot = outputDir + m->getRootName(m->getSimpleName(fastafile));