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validparameter.h */, A7E9B87812D37EC400DA6239 /* venn.cpp */, A7E9B87912D37EC400DA6239 /* venn.h */, A7E9B87E12D37EC400DA6239 /* weightedlinkage.cpp */, ); name = Source; sourceTree = ""; }; 1AB674ADFE9D54B511CA2CBB /* Products */ = { isa = PBXGroup; children = ( 8DD76FB20486AB0100D96B5E /* mothur */, ); name = Products; sourceTree = ""; }; A7386C191619C9FB00651424 /* randomforest */ = { isa = PBXGroup; children = ( A7386C1B1619CACB00651424 /* abstractdecisiontree.hpp */, A7386C241619E52200651424 /* abstractdecisiontree.cpp */, A7386C1D1619CACB00651424 /* decisiontree.hpp */, A7386C28161A110700651424 /* decisiontree.cpp */, A7386C1E1619CACB00651424 /* macros.h */, A7386C1F1619CACB00651424 /* randomforest.hpp */, A77E1937161B201E00DB1A2A /* randomforest.cpp */, A7386C201619CACB00651424 /* rftreenode.hpp */, A77E193A161B289600DB1A2A /* rftreenode.cpp */, 83F25B0A163B031200ABE73D /* forest.cpp */, 83F25B0B163B031200ABE73D /* forest.h */, 834D9D561656D7C400E7FAB9 /* regularizedrandomforest.cpp */, 834D9D571656D7C400E7FAB9 /* regularizedrandomforest.h */, 834D9D5A1656DEC700E7FAB9 /* regularizeddecisiontree.cpp */, 834D9D5B1656DEC700E7FAB9 /* regularizeddecisiontree.h */, ); name = randomforest; sourceTree = ""; }; A7D161E7149F7F50000523E8 /* fortran */ = { isa = PBXGroup; children = ( A7FA2B5A14A0F0C2007C09A6 /* intrv.f */, A7FA2B1514A0EBEA007C09A6 /* sslvrg.f */, A7FA2ABC14A0E881007C09A6 /* bsplvb.f */, A7FA2ABD14A0E881007C09A6 /* bsplvd.f */, A7FA2ABE14A0E881007C09A6 /* bvalue.f */, A7FA2ABF14A0E881007C09A6 /* daxpy.f */, A7FA2AC014A0E881007C09A6 /* ddot.f */, A7FA2AC114A0E881007C09A6 /* dpbfa.f */, A7FA2AC214A0E881007C09A6 /* dpbsl.f */, A7FA2AC314A0E881007C09A6 /* interv.f */, A7FA2AC414A0E881007C09A6 /* sgram.f */, A7FA2AC514A0E881007C09A6 /* sinerp.f */, A7FA2AC614A0E881007C09A6 /* stxwx.f */, ); name = fortran; sourceTree = ""; }; A7E9BA3812D3956100DA6239 /* commands */ = { isa = PBXGroup; children = ( A7E9B6AE12D37EC400DA6239 /* command.hpp */, 219C1DE11552C508004209F9 /* newcommandtemplate.h */, 219C1DDF1552C4BD004209F9 /* newcommandtemplate.cpp */, A7E9B65212D37EC300DA6239 /* aligncommand.h */, A7E9B65112D37EC300DA6239 /* aligncommand.cpp */, A7A61F2B130062E000E05B6B /* amovacommand.h */, A7A61F2C130062E000E05B6B /* amovacommand.cpp */, A71CB15F130B04A2001E7287 /* anosimcommand.h */, A71CB15E130B04A2001E7287 /* anosimcommand.cpp */, A7E9B66112D37EC300DA6239 /* binsequencecommand.h */, A7E9B66012D37EC300DA6239 /* binsequencecommand.cpp */, A7E9B67312D37EC400DA6239 /* catchallcommand.h */, A7E9B67212D37EC400DA6239 /* catchallcommand.cpp */, A7E9B67B12D37EC400DA6239 /* chimerabellerophoncommand.h */, A7E9B67A12D37EC400DA6239 /* chimerabellerophoncommand.cpp */, A7E9B67D12D37EC400DA6239 /* chimeraccodecommand.h */, A7E9B67C12D37EC400DA6239 /* chimeraccodecommand.cpp */, A7E9B67F12D37EC400DA6239 /* chimeracheckcommand.h */, A7E9B67E12D37EC400DA6239 /* chimeracheckcommand.cpp */, A7E9B68312D37EC400DA6239 /* chimerapintailcommand.h */, A7E9B68212D37EC400DA6239 /* chimerapintailcommand.cpp */, A7BF2230145879B2000AD524 /* chimeraperseuscommand.h */, A7BF2231145879B2000AD524 /* chimeraperseuscommand.cpp */, A7E9B68B12D37EC400DA6239 /* chimeraslayercommand.h */, A7E9B68A12D37EC400DA6239 /* chimeraslayercommand.cpp */, A74D36B6137DAFAA00332B0C /* chimerauchimecommand.h */, A74D36B7137DAFAA00332B0C /* chimerauchimecommand.cpp */, A7E9B68D12D37EC400DA6239 /* chopseqscommand.h */, A7E9B68C12D37EC400DA6239 /* chopseqscommand.cpp */, A7E9B69112D37EC400DA6239 /* classifyotucommand.h */, A7E9B69012D37EC400DA6239 /* classifyotucommand.cpp */, A7E9B69312D37EC400DA6239 /* classifyseqscommand.h */, A7E9B69212D37EC400DA6239 /* classifyseqscommand.cpp */, A7386C221619CCE600651424 /* classifysharedcommand.h */, A7386C211619CCE600651424 /* classifysharedcommand.cpp */, A7EEB0F714F29C1B00344B83 /* classifytreecommand.h */, A7EEB0F414F29BFD00344B83 /* classifytreecommand.cpp */, A7E9B69712D37EC400DA6239 /* clearcutcommand.h */, A7E9B69612D37EC400DA6239 /* clearcutcommand.cpp */, A73DDBB813C4A0D1006AAE38 /* clearmemorycommand.h */, A73DDBB913C4A0D1006AAE38 /* clearmemorycommand.cpp */, A7E9B69D12D37EC400DA6239 /* clustercommand.h */, A7E9B69C12D37EC400DA6239 /* clustercommand.cpp */, A7E9B69F12D37EC400DA6239 /* clusterdoturcommand.h */, A7E9B69E12D37EC400DA6239 /* clusterdoturcommand.cpp */, A7E9B6A112D37EC400DA6239 /* clusterfragmentscommand.h */, A7E9B6A012D37EC400DA6239 /* clusterfragmentscommand.cpp */, A7E9B6A312D37EC400DA6239 /* clustersplitcommand.h */, A7E9B6A212D37EC400DA6239 /* clustersplitcommand.cpp */, A7E9B6A912D37EC400DA6239 /* collectcommand.h */, A7E9B6A812D37EC400DA6239 /* collectcommand.cpp */, A7E9B6AD12D37EC400DA6239 /* collectsharedcommand.h */, A7E9B6AC12D37EC400DA6239 /* collectsharedcommand.cpp */, A7E9B6B812D37EC400DA6239 /* consensusseqscommand.h */, A7E9B6B712D37EC400DA6239 /* consensusseqscommand.cpp */, A7C3DC0A14FE457500FE1924 /* cooccurrencecommand.h */, A7C3DC0914FE457500FE1924 /* cooccurrencecommand.cpp */, A7E9B6BA12D37EC400DA6239 /* corraxescommand.h */, A7E9B6B912D37EC400DA6239 /* corraxescommand.cpp */, A795840B13F13CD900F201D5 /* countgroupscommand.h */, A795840C13F13CD900F201D5 /* countgroupscommand.cpp */, A7730EFD13967241007433A3 /* countseqscommand.h */, A7730EFE13967241007433A3 /* countseqscommand.cpp */, A77EBD2C1523707F00ED407C /* createdatabasecommand.h */, A77EBD2E1523709100ED407C /* createdatabasecommand.cpp */, A7E9B6C412D37EC400DA6239 /* deconvolutecommand.h */, A7E9B6C312D37EC400DA6239 /* deconvolutecommand.cpp */, A7E9B6C612D37EC400DA6239 /* degapseqscommand.h */, A7E9B6C512D37EC400DA6239 /* degapseqscommand.cpp */, A7E9B6C812D37EC400DA6239 /* deuniqueseqscommand.h */, A7E9B6C712D37EC400DA6239 /* deuniqueseqscommand.cpp */, A77A221D139001B600B0BE70 /* deuniquetreecommand.h */, A77A221E139001B600B0BE70 /* deuniquetreecommand.cpp */, A7E9B6CC12D37EC400DA6239 /* distancecommand.h */, A7E9B6CB12D37EC400DA6239 /* distancecommand.cpp */, A7E9B6E412D37EC400DA6239 /* filterseqscommand.h */, A7E9B6E312D37EC400DA6239 /* filterseqscommand.cpp */, A79EEF8816971D640006DEC1 /* filtersharedcommand.h */, A79EEF8516971D4A0006DEC1 /* filtersharedcommand.cpp */, A778FE69134CA6CA00C0BA33 /* getcommandinfocommand.h */, A778FE6A134CA6CA00C0BA33 /* getcommandinfocommand.cpp */, 219C1DE51559BCF2004209F9 /* getcoremicrobiomecommand.h */, 219C1DE31559BCCD004209F9 /* getcoremicrobiomecommand.cpp */, A7FE7C3E1330EA1000F7B327 /* getcurrentcommand.h */, A7FE7C3F1330EA1000F7B327 /* getcurrentcommand.cpp */, A7128B1A16B7001200723BE4 /* getdistscommand.h */, A7128B1C16B7002600723BE4 /* getdistscommand.cpp */, A7E9B6F312D37EC400DA6239 /* getgroupcommand.h */, A7E9B6F212D37EC400DA6239 /* getgroupcommand.cpp */, A7E9B6F512D37EC400DA6239 /* getgroupscommand.h */, A7E9B6F412D37EC400DA6239 /* getgroupscommand.cpp */, A7E9B6F712D37EC400DA6239 /* getlabelcommand.h */, A7E9B6F612D37EC400DA6239 /* getlabelcommand.cpp */, A7548FAB17142EA500B1F05A /* getmetacommunitycommand.h */, A7548FAC17142EBC00B1F05A /* getmetacommunitycommand.cpp */, A70056E8156A93E300924A2D /* getotulabelscommand.h */, A70056E5156A93D000924A2D /* getotulabelscommand.cpp */, A7E9B6F912D37EC400DA6239 /* getlineagecommand.h */, A7E9B6F812D37EC400DA6239 /* getlineagecommand.cpp */, A7E9B6FB12D37EC400DA6239 /* getlistcountcommand.h */, A7E9B6FA12D37EC400DA6239 /* getlistcountcommand.cpp */, A7E9B6FF12D37EC400DA6239 /* getoturepcommand.h */, A7E9B6FE12D37EC400DA6239 /* getoturepcommand.cpp */, A7E9B70112D37EC400DA6239 /* getotuscommand.h */, A7E9B70012D37EC400DA6239 /* getotuscommand.cpp */, A7E9B70312D37EC400DA6239 /* getrabundcommand.h */, A7E9B70212D37EC400DA6239 /* getrabundcommand.cpp */, A7E9B70512D37EC400DA6239 /* getrelabundcommand.h */, A7E9B70412D37EC400DA6239 /* getrelabundcommand.cpp */, A7E9B70712D37EC400DA6239 /* getsabundcommand.h */, A7E9B70612D37EC400DA6239 /* getsabundcommand.cpp */, A7E9B70912D37EC400DA6239 /* getseqscommand.h */, A7E9B70812D37EC400DA6239 /* getseqscommand.cpp */, A7E9B70B12D37EC400DA6239 /* getsharedotucommand.h */, A7E9B70A12D37EC400DA6239 /* getsharedotucommand.cpp */, A7E9B71B12D37EC400DA6239 /* hclustercommand.h */, A7E9B71A12D37EC400DA6239 /* hclustercommand.cpp */, A7E9B71F12D37EC400DA6239 /* heatmapcommand.h */, A7E9B71E12D37EC400DA6239 /* heatmapcommand.cpp */, A7E9B72312D37EC400DA6239 /* heatmapsimcommand.h */, A7E9B72212D37EC400DA6239 /* heatmapsimcommand.cpp */, A7E9B72912D37EC400DA6239 /* helpcommand.h */, A7E9B72812D37EC400DA6239 /* helpcommand.cpp */, A75790571301749D00A30DAB /* homovacommand.h */, A75790581301749D00A30DAB /* homovacommand.cpp */, A7E9B72C12D37EC400DA6239 /* indicatorcommand.h */, A7E9B72B12D37EC400DA6239 /* indicatorcommand.cpp */, A7496D2D167B531B00CC7D7C /* kruskalwalliscommand.h */, A7496D2C167B531B00CC7D7C /* kruskalwalliscommand.cpp */, A7E9B73C12D37EC400DA6239 /* libshuffcommand.h */, A7E9B73B12D37EC400DA6239 /* libshuffcommand.cpp */, A7A0671C156294810095C8C5 /* listotulabelscommand.h */, A7A067191562946F0095C8C5 /* listotulabelscommand.cpp */, A7E9B73E12D37EC400DA6239 /* listseqscommand.h */, A7E9B73D12D37EC400DA6239 /* listseqscommand.cpp */, A73901051588C3EF00ED2ED6 /* loadlogfilecommand.h */, A73901071588C40900ED2ED6 /* loadlogfilecommand.cpp */, A7FA10001302E096003860FE /* mantelcommand.h */, A7FA10011302E096003860FE /* mantelcommand.cpp */, A724D2B4153C8600000A826F /* makebiomcommand.h */, A724D2B6153C8628000A826F /* makebiomcommand.cpp */, A7A0671D1562AC230095C8C5 /* makecontigscommand.h */, A7A0671E1562AC3E0095C8C5 /* makecontigscommand.cpp */, A799F5B71309A3E000AEEFA0 /* makefastqcommand.h */, A799F5B81309A3E000AEEFA0 /* makefastqcommand.cpp */, A7E9B74412D37EC400DA6239 /* makegroupcommand.h */, A7E9B74312D37EC400DA6239 /* makegroupcommand.cpp */, A7E6F69C17427CF2006775E2 /* makelookupcommand.h */, A7E6F69D17427D06006775E2 /* makelookupcommand.cpp */, A7E9B74A12D37EC400DA6239 /* matrixoutputcommand.h */, A7E9B74912D37EC400DA6239 /* matrixoutputcommand.cpp */, A7E9B75412D37EC400DA6239 /* mergefilecommand.h */, A7E9B75312D37EC400DA6239 /* mergefilecommand.cpp */, A71FE12A12EDF72400963CA7 /* mergegroupscommand.h */, A71FE12B12EDF72400963CA7 /* mergegroupscommand.cpp */, A799314816CBD0BC0017E888 /* mergetaxsummarycommand.h */, A799314A16CBD0CD0017E888 /* mergetaxsummarycommand.cpp */, A7E9B75812D37EC400DA6239 /* metastatscommand.h */, A7E9B75712D37EC400DA6239 /* metastatscommand.cpp */, A7E9B75A12D37EC400DA6239 /* mgclustercommand.h */, A7E9B75912D37EC400DA6239 /* mgclustercommand.cpp */, A7E9B76A12D37EC400DA6239 /* nocommands.h */, A7E9B76912D37EC400DA6239 /* nocommands.cpp */, A7E9B76C12D37EC400DA6239 /* normalizesharedcommand.h */, A7E9B76B12D37EC400DA6239 /* normalizesharedcommand.cpp */, A713EBEB12DC7C5E000092AC /* nmdscommand.h */, A713EBEC12DC7C5E000092AC /* nmdscommand.cpp */, A7A3C8C814D041AD00B1BFBE /* otuassociationcommand.h */, A7A3C8C714D041AD00B1BFBE /* otuassociationcommand.cpp */, A7E9B77A12D37EC400DA6239 /* otuhierarchycommand.h */, A7E9B77912D37EC400DA6239 /* otuhierarchycommand.cpp */, A7E9B77E12D37EC400DA6239 /* pairwiseseqscommand.h */, A7E9B77D12D37EC400DA6239 /* pairwiseseqscommand.cpp */, A7E9B78012D37EC400DA6239 /* parsefastaqcommand.h */, A7E9B77F12D37EC400DA6239 /* parsefastaqcommand.cpp */, A7E9B78212D37EC400DA6239 /* parselistscommand.h */, A7E9B78112D37EC400DA6239 /* parselistscommand.cpp */, A7E9B78612D37EC400DA6239 /* parsimonycommand.h */, A7E9B78512D37EC400DA6239 /* parsimonycommand.cpp */, A7FC486512D795D60055BC5C /* pcacommand.h */, A7FC486612D795D60055BC5C /* pcacommand.cpp */, A7E9B78812D37EC400DA6239 /* pcoacommand.h */, A7E9B78712D37EC400DA6239 /* pcoacommand.cpp */, A76CDD7F1510F09A004C8458 /* pcrseqscommand.h */, A76CDD811510F143004C8458 /* prcseqscommand.cpp */, A7E9B78C12D37EC400DA6239 /* phylodiversitycommand.h */, A7E9B78B12D37EC400DA6239 /* phylodiversitycommand.cpp */, A7E9B79212D37EC400DA6239 /* phylotypecommand.h */, A7E9B79112D37EC400DA6239 /* phylotypecommand.cpp */, A7E9B79612D37EC400DA6239 /* pipelinepdscommand.h */, A7E9B79512D37EC400DA6239 /* pipelinepdscommand.cpp */, A7E9B79812D37EC400DA6239 /* preclustercommand.h */, A7E9B79712D37EC400DA6239 /* preclustercommand.cpp */, A74C06E616A9C097008390A3 /* primerdesigncommand.h */, A74C06E816A9C0A8008390A3 /* primerdesigncommand.cpp */, A7E9B7A212D37EC400DA6239 /* quitcommand.h */, A7E9B7A112D37EC400DA6239 /* quitcommand.cpp */, A7E9B7AC12D37EC400DA6239 /* rarefactcommand.h */, A7E9B7AB12D37EC400DA6239 /* rarefactcommand.cpp */, A7E9B7AF12D37EC400DA6239 /* rarefactsharedcommand.h */, A7E9B7AE12D37EC400DA6239 /* rarefactsharedcommand.cpp */, A7B0231716B8245D006BA09E /* removedistscommand.h */, A7B0231416B8244B006BA09E /* removedistscommand.cpp */, A7E9B7C412D37EC400DA6239 /* removegroupscommand.h */, A7E9B7C312D37EC400DA6239 /* removegroupscommand.cpp */, A7E9B7C612D37EC400DA6239 /* removelineagecommand.h */, A7E9B7C512D37EC400DA6239 /* removelineagecommand.cpp */, A7E9B7C812D37EC400DA6239 /* removeotuscommand.h */, A7E9B7C712D37EC400DA6239 /* removeotuscommand.cpp */, A70056E9156AB6D400924A2D /* removeotulabelscommand.h */, A70056EA156AB6E500924A2D /* removeotulabelscommand.cpp */, A727864212E9E28C00F86ABA /* removerarecommand.h */, A727864312E9E28C00F86ABA /* removerarecommand.cpp */, A7E9B7CA12D37EC400DA6239 /* removeseqscommand.h */, A7E9B7C912D37EC400DA6239 /* removeseqscommand.cpp */, A7E9B7CE12D37EC400DA6239 /* reversecommand.h */, A7E9B7CD12D37EC400DA6239 /* reversecommand.cpp */, A7E9B7D212D37EC400DA6239 /* screenseqscommand.h */, A7E9B7D112D37EC400DA6239 /* screenseqscommand.cpp */, A7E9B7D412D37EC400DA6239 /* secondarystructurecommand.h */, A7E9B7D312D37EC400DA6239 /* secondarystructurecommand.cpp */, A7E9B7D612D37EC400DA6239 /* sensspeccommand.h */, A7E9B7D512D37EC400DA6239 /* sensspeccommand.cpp */, A7E9B7D812D37EC400DA6239 /* seqerrorcommand.h */, A7E9B7D712D37EC400DA6239 /* seqerrorcommand.cpp */, A7E9B7DA12D37EC400DA6239 /* seqsummarycommand.h */, A7E9B7D912D37EC400DA6239 /* seqsummarycommand.cpp */, A7FE7E6B13311EA400F7B327 /* setcurrentcommand.h */, A7FE7E6C13311EA400F7B327 /* setcurrentcommand.cpp */, A7E9B7E012D37EC400DA6239 /* setdircommand.h */, A7E9B7DF12D37EC400DA6239 /* setdircommand.cpp */, A7E9B7E212D37EC400DA6239 /* setlogfilecommand.h */, A7E9B7E112D37EC400DA6239 /* setlogfilecommand.cpp */, A7E9B7E412D37EC400DA6239 /* sffinfocommand.h */, A7E9B7E312D37EC400DA6239 /* sffinfocommand.cpp */, A7C7DAB615DA75760059B0CF /* sffmultiplecommand.h */, A7C7DAB815DA758B0059B0CF /* sffmultiplecommand.cpp */, A7E9B7F312D37EC400DA6239 /* sharedcommand.h */, A7E9B7F212D37EC400DA6239 /* sharedcommand.cpp */, A7E9B82812D37EC400DA6239 /* shhhercommand.h */, A7E9B82712D37EC400DA6239 /* shhhercommand.cpp */, A774101214695AF60098E6AC /* shhhseqscommand.h */, A774101314695AF60098E6AC /* shhhseqscommand.cpp */, A7A32DAC14DC43D10001D2E5 /* sortseqscommand.h */, A7A32DA914DC43B00001D2E5 /* sortseqscommand.cpp */, A77B7183173D222F002163C2 /* sparcccommand.h */, A77B7184173D2240002163C2 /* sparcccommand.cpp */, A7E9B84012D37EC400DA6239 /* splitabundcommand.h */, A7E9B83F12D37EC400DA6239 /* splitabundcommand.cpp */, A7E9B84212D37EC400DA6239 /* splitgroupscommand.h */, A7E9B84112D37EC400DA6239 /* splitgroupscommand.cpp */, A7E9B85012D37EC400DA6239 /* subsamplecommand.h */, A7E9B84F12D37EC400DA6239 /* subsamplecommand.cpp */, A7E9B85812D37EC400DA6239 /* summarycommand.h */, A7E9B85712D37EC400DA6239 /* summarycommand.cpp */, A754149514840CF7005850D1 /* summaryqualcommand.h */, A754149614840CF7005850D1 /* summaryqualcommand.cpp */, A7E9B85A12D37EC400DA6239 /* summarysharedcommand.h */, A7E9B85912D37EC400DA6239 /* summarysharedcommand.cpp */, A7FFB556142CA02C004884F2 /* summarytaxcommand.h */, A7FFB557142CA02C004884F2 /* summarytaxcommand.cpp */, A7E9B85C12D37EC400DA6239 /* systemcommand.h */, A7E9B85B12D37EC400DA6239 /* systemcommand.cpp */, A7E9B86312D37EC400DA6239 /* treegroupscommand.h */, A7E9B86212D37EC400DA6239 /* treegroupscommand.cpp */, A7E9B86912D37EC400DA6239 /* trimflowscommand.h */, A7E9B86812D37EC400DA6239 /* trimflowscommand.cpp */, A7E9B86B12D37EC400DA6239 /* trimseqscommand.h */, A7E9B86A12D37EC400DA6239 /* trimseqscommand.cpp */, A7E9B86D12D37EC400DA6239 /* unifracunweightedcommand.h */, A7E9B86C12D37EC400DA6239 /* unifracunweightedcommand.cpp */, A7E9B86F12D37EC400DA6239 /* unifracweightedcommand.h */, A7E9B86E12D37EC400DA6239 /* unifracweightedcommand.cpp */, A7E9B87B12D37EC400DA6239 /* venncommand.h */, A7E9B87A12D37EC400DA6239 /* venncommand.cpp */, ); name = commands; sourceTree = ""; }; A7E9BA3F12D395F700DA6239 /* calculators */ = { isa = PBXGroup; children = ( 7E78911B135F3E8600E725D2 /* eachgapdistignorens.h */, A7E9B64F12D37EC300DA6239 /* ace.cpp */, A7E9B65012D37EC300DA6239 /* ace.h */, A7E9B65E12D37EC300DA6239 /* bergerparker.cpp */, A7E9B65F12D37EC300DA6239 /* bergerparker.h */, A7E9B66612D37EC400DA6239 /* boneh.cpp */, A7E9B66712D37EC400DA6239 /* boneh.h */, A7E9B66812D37EC400DA6239 /* bootstrap.cpp */, A7E9B66912D37EC400DA6239 /* bootstrap.h */, A7E9B66C12D37EC400DA6239 /* bstick.cpp */, A7E9B66D12D37EC400DA6239 /* bstick.h */, A7E9B66E12D37EC400DA6239 /* calculator.cpp */, A7E9B66F12D37EC400DA6239 /* calculator.h */, A7E9B67012D37EC400DA6239 /* canberra.cpp */, A7E9B67112D37EC400DA6239 /* canberra.h */, A7E9B67612D37EC400DA6239 /* chao1.cpp */, A7E9B67712D37EC400DA6239 /* chao1.h */, A7E9B6BB12D37EC400DA6239 /* coverage.cpp */, A7E9B6BC12D37EC400DA6239 /* coverage.h */, A7E9B6CA12D37EC400DA6239 /* dist.h */, A7E9B6C012D37EC400DA6239 /* dayhoff.h */, A7E9B6D512D37EC400DA6239 /* eachgapdist.h */, A7E9B6D612D37EC400DA6239 /* eachgapignore.h */, A7E9B6D712D37EC400DA6239 /* efron.cpp */, A7E9B6D812D37EC400DA6239 /* efron.h */, A7E9B6E212D37EC400DA6239 /* filters.h */, A7E9B6F012D37EC400DA6239 /* geom.cpp */, A7E9B6F112D37EC400DA6239 /* geom.h */, A7E9B70E12D37EC400DA6239 /* goodscoverage.cpp */, A7E9B70F12D37EC400DA6239 /* goodscoverage.h */, A7E9B71212D37EC400DA6239 /* gower.cpp */, A7E9B71312D37EC400DA6239 /* gower.h */, A7E9B71612D37EC400DA6239 /* hamming.cpp */, A7E9B71712D37EC400DA6239 /* hamming.h */, A7E9B72412D37EC400DA6239 /* heip.cpp */, A7E9B72512D37EC400DA6239 /* heip.h */, A7E9B72612D37EC400DA6239 /* hellinger.cpp */, A7E9B72712D37EC400DA6239 /* hellinger.h */, A7E9B72A12D37EC400DA6239 /* ignoregaps.h */, A7E9B72F12D37EC400DA6239 /* invsimpson.cpp */, A7E9B73012D37EC400DA6239 /* invsimpson.h */, A7E9B73112D37EC400DA6239 /* jackknife.cpp */, A7E9B73212D37EC400DA6239 /* jackknife.h */, A7E9B74112D37EC400DA6239 /* logsd.cpp */, A7E9B74212D37EC400DA6239 /* logsd.h */, A7E9B74712D37EC400DA6239 /* manhattan.cpp */, A7E9B74812D37EC400DA6239 /* manhattan.h */, A7E9B74B12D37EC400DA6239 /* memchi2.cpp */, A7E9B74C12D37EC400DA6239 /* memchi2.h */, A7E9B74D12D37EC400DA6239 /* memchord.cpp */, A7E9B74E12D37EC400DA6239 /* memchord.h */, A7E9B74F12D37EC400DA6239 /* memeuclidean.cpp */, A7E9B75012D37EC400DA6239 /* memeuclidean.h */, A7E9B75112D37EC400DA6239 /* mempearson.cpp */, A7E9B75212D37EC400DA6239 /* mempearson.h */, A7E9B76D12D37EC400DA6239 /* npshannon.cpp */, A7E9B76E12D37EC400DA6239 /* npshannon.h */, A7E9B76F12D37EC400DA6239 /* nseqs.h */, A7E9B77112D37EC400DA6239 /* odum.cpp */, A7E9B77212D37EC400DA6239 /* odum.h */, A7E9B77312D37EC400DA6239 /* onegapdist.h */, A7E9B77412D37EC400DA6239 /* onegapignore.h */, A7E9B78412D37EC400DA6239 /* parsimony.h */, A7E9B78312D37EC400DA6239 /* parsimony.cpp */, A7E9B79912D37EC400DA6239 /* prng.cpp */, A7E9B79A12D37EC400DA6239 /* prng.h */, A7E9B79D12D37EC400DA6239 /* qstat.cpp */, A7E9B79E12D37EC400DA6239 /* qstat.h */, A7E9B7E512D37EC400DA6239 /* shannon.cpp */, A7E9B7E612D37EC400DA6239 /* shannon.h */, A7E9B7E712D37EC400DA6239 /* shannoneven.cpp */, A7E9B7E812D37EC400DA6239 /* shannoneven.h */, A7E9B7E912D37EC400DA6239 /* sharedace.cpp */, A7E9B7EA12D37EC400DA6239 /* sharedace.h */, A7E9B7EC12D37EC400DA6239 /* sharedanderbergs.cpp */, A7E9B7ED12D37EC400DA6239 /* sharedanderbergs.h */, A7E9B7EE12D37EC400DA6239 /* sharedbraycurtis.cpp */, A7E9B7EF12D37EC400DA6239 /* sharedbraycurtis.h */, A7E9B7F012D37EC400DA6239 /* sharedchao1.cpp */, A7E9B7F112D37EC400DA6239 /* sharedchao1.h */, A7E9B7F412D37EC400DA6239 /* sharedjabund.cpp */, A7E9B7F512D37EC400DA6239 /* sharedjabund.h */, A7E9B7F612D37EC400DA6239 /* sharedjackknife.cpp */, A7E9B7F712D37EC400DA6239 /* sharedjackknife.h */, A7E9B7F812D37EC400DA6239 /* sharedjclass.cpp */, A7E9B7F912D37EC400DA6239 /* sharedjclass.h */, A7E9B7FA12D37EC400DA6239 /* sharedjest.cpp */, A7E9B7FB12D37EC400DA6239 /* sharedjest.h */, A7E9B7FC12D37EC400DA6239 /* sharedkstest.cpp */, A7E9B7FD12D37EC400DA6239 /* sharedkstest.h */, A7E9B7FE12D37EC400DA6239 /* sharedkulczynski.cpp */, A7E9B7FF12D37EC400DA6239 /* sharedkulczynski.h */, A7E9B80012D37EC400DA6239 /* sharedkulczynskicody.cpp */, A7E9B80112D37EC400DA6239 /* sharedkulczynskicody.h */, A7E9B80212D37EC400DA6239 /* sharedlennon.cpp */, A7E9B80312D37EC400DA6239 /* sharedlennon.h */, A7E9B80612D37EC400DA6239 /* sharedmarczewski.cpp */, A7E9B80712D37EC400DA6239 /* sharedmarczewski.h */, A7E9B80812D37EC400DA6239 /* sharedmorisitahorn.cpp */, A7E9B80912D37EC400DA6239 /* sharedmorisitahorn.h */, A7E9B80A12D37EC400DA6239 /* sharednseqs.h */, A7E9B80B12D37EC400DA6239 /* sharedochiai.cpp */, A7E9B80C12D37EC400DA6239 /* sharedochiai.h */, A7E9B81512D37EC400DA6239 /* sharedsobs.cpp */, A7E9B81612D37EC400DA6239 /* sharedsobs.h */, A7E9B81712D37EC400DA6239 /* sharedsobscollectsummary.cpp */, A7E9B81812D37EC400DA6239 /* sharedsobscollectsummary.h */, A7E9B81912D37EC400DA6239 /* sharedsorabund.cpp */, A7E9B81A12D37EC400DA6239 /* sharedsorabund.h */, A7E9B81B12D37EC400DA6239 /* sharedsorclass.cpp */, A7E9B81C12D37EC400DA6239 /* sharedsorclass.h */, A7E9B81D12D37EC400DA6239 /* sharedsorest.cpp */, A7E9B81E12D37EC400DA6239 /* sharedsorest.h */, A7E9B81F12D37EC400DA6239 /* sharedthetan.cpp */, A7E9B82012D37EC400DA6239 /* sharedthetan.h */, A7E9B82112D37EC400DA6239 /* sharedthetayc.cpp */, A7E9B82212D37EC400DA6239 /* sharedthetayc.h */, A7E9B82512D37EC400DA6239 /* shen.cpp */, A7E9B82612D37EC400DA6239 /* shen.h */, A7E9B82912D37EC400DA6239 /* simpson.cpp */, A7E9B82A12D37EC400DA6239 /* simpson.h */, A7E9B82B12D37EC400DA6239 /* simpsoneven.cpp */, A7E9B82C12D37EC400DA6239 /* simpsoneven.h */, A7E9B83212D37EC400DA6239 /* smithwilson.cpp */, A7E9B83312D37EC400DA6239 /* smithwilson.h */, A7E9B83412D37EC400DA6239 /* sobs.h */, A7E9B83512D37EC400DA6239 /* soergel.cpp */, A7E9B83612D37EC400DA6239 /* soergel.h */, A7E9B83712D37EC400DA6239 /* solow.cpp */, A7E9B83812D37EC400DA6239 /* solow.h */, A7E9B83B12D37EC400DA6239 /* spearman.cpp */, A7E9B83C12D37EC400DA6239 /* spearman.h */, A7E9B83D12D37EC400DA6239 /* speciesprofile.cpp */, A7E9B83E12D37EC400DA6239 /* speciesprofile.h */, A7E9B84512D37EC400DA6239 /* structchi2.cpp */, A7E9B84612D37EC400DA6239 /* structchi2.h */, A7E9B84712D37EC400DA6239 /* structchord.cpp */, A7E9B84812D37EC400DA6239 /* structchord.h */, A7E9B84912D37EC400DA6239 /* structeuclidean.cpp */, A7E9B84A12D37EC400DA6239 /* structeuclidean.h */, A7E9B84B12D37EC400DA6239 /* structkulczynski.cpp */, A7E9B84C12D37EC400DA6239 /* structkulczynski.h */, A7E9B84D12D37EC400DA6239 /* structpearson.cpp */, A7E9B84E12D37EC400DA6239 /* structpearson.h */, A7E9B86112D37EC400DA6239 /* treecalculator.h */, A7E9B87112D37EC400DA6239 /* unweighted.h */, A7E9B87012D37EC400DA6239 /* unweighted.cpp */, A7E9B87212D37EC400DA6239 /* uvest.cpp */, A7E9B87312D37EC400DA6239 /* uvest.h */, A7E9B87D12D37EC400DA6239 /* weighted.h */, A7E9B87C12D37EC400DA6239 /* weighted.cpp */, A7E9B87F12D37EC400DA6239 /* whittaker.cpp */, A7E9B88012D37EC400DA6239 /* whittaker.h */, ); name = calculators; sourceTree = ""; }; A7E9BA4212D3960D00DA6239 /* containers */ = { isa = PBXGroup; children = ( A7E9B65312D37EC300DA6239 /* alignment.cpp */, A7E9B65412D37EC300DA6239 /* alignment.hpp */, A7E9B65512D37EC300DA6239 /* alignmentcell.cpp */, A7E9B65612D37EC300DA6239 /* alignmentcell.hpp */, A7E9B65712D37EC300DA6239 /* alignmentdb.cpp */, A7E9B65812D37EC300DA6239 /* alignmentdb.h */, A7E9B66212D37EC300DA6239 /* blastalign.cpp */, A7E9B66312D37EC400DA6239 /* blastalign.hpp */, A7E9B66412D37EC400DA6239 /* blastdb.cpp */, A7E9B66512D37EC400DA6239 /* blastdb.hpp */, A74D59A6159A1E3600043046 /* counttable.h */, A74D59A3159A1E2000043046 /* counttable.cpp */, A7E9B6BD12D37EC400DA6239 /* database.cpp */, A7E9B6BE12D37EC400DA6239 /* database.hpp */, A7E9B6BF12D37EC400DA6239 /* datavector.hpp */, A7E9B6CE12D37EC400DA6239 /* distancedb.hpp */, A7E9B6CD12D37EC400DA6239 /* distancedb.cpp */, A7E9B6DE12D37EC400DA6239 /* fastamap.cpp */, A7E9B6DF12D37EC400DA6239 /* fastamap.h */, A7E9B6E812D37EC400DA6239 /* flowdata.h */, A7E9B6E712D37EC400DA6239 /* flowdata.cpp */, A7E9B6EE12D37EC400DA6239 /* fullmatrix.cpp */, A7E9B6EF12D37EC400DA6239 /* fullmatrix.h */, A7E9B71412D37EC400DA6239 /* groupmap.cpp */, A7E9B71512D37EC400DA6239 /* groupmap.h */, A7E9B73312D37EC400DA6239 /* kmer.cpp */, A7E9B73412D37EC400DA6239 /* kmer.hpp */, A7E9B73512D37EC400DA6239 /* kmerdb.cpp */, A7E9B73612D37EC400DA6239 /* kmerdb.hpp */, A7E9B73F12D37EC400DA6239 /* listvector.cpp */, A7E9B74012D37EC400DA6239 /* listvector.hpp */, A7E9B75F12D37EC400DA6239 /* nameassignment.cpp */, A7E9B76012D37EC400DA6239 /* nameassignment.hpp */, A7E9B77712D37EC400DA6239 /* ordervector.cpp */, A7E9B77812D37EC400DA6239 /* ordervector.hpp */, A7E9B79F12D37EC400DA6239 /* qualityscores.cpp */, A7E9B7A012D37EC400DA6239 /* qualityscores.h */, A7E9B7A312D37EC400DA6239 /* rabundvector.cpp */, A7E9B7A412D37EC400DA6239 /* rabundvector.hpp */, A721765513BB9F7D0014DAAE /* referencedb.h */, A721765613BB9F7D0014DAAE /* referencedb.cpp */, A7E9B7CB12D37EC400DA6239 /* reportfile.cpp */, A7E9B7CC12D37EC400DA6239 /* reportfile.h */, A7E9B7CF12D37EC400DA6239 /* sabundvector.cpp */, A7E9B7D012D37EC400DA6239 /* sabundvector.hpp */, A7E9B7DB12D37EC400DA6239 /* sequence.cpp */, A7E9B7DC12D37EC400DA6239 /* sequence.hpp */, A741FAD415D168A00067BCC5 /* sequencecountparser.h */, A741FAD115D1688E0067BCC5 /* sequencecountparser.cpp */, A7E9B7DD12D37EC400DA6239 /* sequencedb.cpp */, A7E9B7DE12D37EC400DA6239 /* sequencedb.h */, A7F9F5CD141A5E500032F693 /* sequenceparser.h */, A7F9F5CE141A5E500032F693 /* sequenceparser.cpp */, A7E9B80412D37EC400DA6239 /* sharedlistvector.cpp */, A7E9B80512D37EC400DA6239 /* sharedlistvector.h */, A7E9B80E12D37EC400DA6239 /* sharedordervector.h */, A7E9B80D12D37EC400DA6239 /* sharedordervector.cpp */, A7E9B81012D37EC400DA6239 /* sharedrabundfloatvector.h */, A7E9B80F12D37EC400DA6239 /* sharedrabundfloatvector.cpp */, A7E9B81112D37EC400DA6239 /* sharedrabundvector.cpp */, A7E9B81212D37EC400DA6239 /* sharedrabundvector.h */, A7E9B81312D37EC400DA6239 /* sharedsabundvector.cpp */, A7E9B81412D37EC400DA6239 /* sharedsabundvector.h */, A7E9B83912D37EC400DA6239 /* sparsematrix.cpp */, A7E9B83A12D37EC400DA6239 /* sparsematrix.hpp */, A7E0243F15B4522000A5F046 /* sparsedistancematrix.h */, A7E0243C15B4520A00A5F046 /* sparsedistancematrix.cpp */, A7E9B85112D37EC400DA6239 /* suffixdb.cpp */, A7E9B85212D37EC400DA6239 /* suffixdb.hpp */, A7E9B85312D37EC400DA6239 /* suffixnodes.cpp */, A7E9B85412D37EC400DA6239 /* suffixnodes.hpp */, A7E9B85512D37EC400DA6239 /* suffixtree.cpp */, A7E9B85612D37EC400DA6239 /* suffixtree.hpp */, A7E9B85F12D37EC400DA6239 /* tree.cpp */, A7E9B86012D37EC400DA6239 /* tree.h */, A7E9B86412D37EC400DA6239 /* treemap.cpp */, A7E9B86512D37EC400DA6239 /* treemap.h */, A7E9B86612D37EC400DA6239 /* treenode.cpp */, A7E9B86712D37EC400DA6239 /* treenode.h */, ); name = containers; sourceTree = ""; }; A7E9BA4512D3965600DA6239 /* chimera */ = { isa = PBXGroup; children = ( A7E9B65C12D37EC300DA6239 /* bellerophon.cpp */, A7E9B65D12D37EC300DA6239 /* bellerophon.h */, A7E9B67412D37EC400DA6239 /* ccode.cpp */, A7E9B67512D37EC400DA6239 /* ccode.h */, A7E9B67812D37EC400DA6239 /* chimera.cpp */, A7E9B67912D37EC400DA6239 /* chimera.h */, A7E9B68012D37EC400DA6239 /* chimeracheckrdp.cpp */, A7E9B68112D37EC400DA6239 /* chimeracheckrdp.h */, A7E9B68412D37EC400DA6239 /* chimerarealigner.cpp */, A7E9B68512D37EC400DA6239 /* chimerarealigner.h */, A7E9B6C212D37EC400DA6239 /* decalc.h */, A7E9B6C112D37EC400DA6239 /* decalc.cpp */, A7E9B68812D37EC400DA6239 /* chimeraslayer.cpp */, A7E9B68912D37EC400DA6239 /* chimeraslayer.h */, A7E9B74612D37EC400DA6239 /* maligner.h */, A7E9B74512D37EC400DA6239 /* maligner.cpp */, A7BF221314587886000AD524 /* myPerseus.h */, A7BF221214587886000AD524 /* myPerseus.cpp */, A7E9B79312D37EC400DA6239 /* pintail.cpp */, A7E9B79412D37EC400DA6239 /* pintail.h */, A7E9B82E12D37EC400DA6239 /* slayer.cpp */, A7E9B82F12D37EC400DA6239 /* slayer.h */, ); name = chimera; sourceTree = ""; }; A7E9BA4B12D3966900DA6239 /* classifier */ = { isa = PBXGroup; children = ( A721AB67161C570F009860A1 /* alignnode.h */, A721AB66161C570F009860A1 /* alignnode.cpp */, A721AB69161C570F009860A1 /* aligntree.h */, A721AB68161C570F009860A1 /* aligntree.cpp */, A7E9B65B12D37EC300DA6239 /* bayesian.h */, A7E9B65A12D37EC300DA6239 /* bayesian.cpp */, A7E9B68E12D37EC400DA6239 /* classify.cpp */, A7E9B68F12D37EC400DA6239 /* classify.h */, A721AB6E161C572A009860A1 /* kmernode.h */, A721AB6D161C572A009860A1 /* kmernode.cpp */, A721AB70161C572A009860A1 /* kmertree.h */, A721AB6F161C572A009860A1 /* kmertree.cpp */, A7E9B73812D37EC400DA6239 /* knn.h */, A7E9B73712D37EC400DA6239 /* knn.cpp */, A7E9B78D12D37EC400DA6239 /* phylosummary.cpp */, A7E9B78E12D37EC400DA6239 /* phylosummary.h */, A7E9B78F12D37EC400DA6239 /* phylotree.cpp */, A7E9B79012D37EC400DA6239 /* phylotree.h */, A7E9B85D12D37EC400DA6239 /* taxonomyequalizer.cpp */, A7E9B85E12D37EC400DA6239 /* taxonomyequalizer.h */, A721AB74161C573B009860A1 /* taxonomynode.h */, A721AB73161C573B009860A1 /* taxonomynode.cpp */, ); name = classifier; sourceTree = ""; }; A7E9BA4F12D398D700DA6239 /* clearcut */ = { isa = PBXGroup; children = ( A7E9B69412D37EC400DA6239 /* clearcut.cpp */, A7E9B69512D37EC400DA6239 /* clearcut.h */, A7E9B6A412D37EC400DA6239 /* cmdargs.cpp */, A7E9B6A512D37EC400DA6239 /* cmdargs.h */, A7E9B6B312D37EC400DA6239 /* common.h */, A7E9B6CF12D37EC400DA6239 /* distclearcut.cpp */, A7E9B6D012D37EC400DA6239 /* distclearcut.h */, A7E9B6D312D37EC400DA6239 /* dmat.cpp */, A7E9B6D412D37EC400DA6239 /* dmat.h */, A7E9B6DC12D37EC400DA6239 /* fasta.cpp */, A7E9B6DD12D37EC400DA6239 /* fasta.h */, A7E9B6FD12D37EC400DA6239 /* getopt_long.h */, A7E9B6FC12D37EC400DA6239 /* getopt_long.cpp */, ); name = clearcut; sourceTree = ""; }; A7E9BA5312D39A5E00DA6239 /* read */ = { isa = PBXGroup; children = ( A7E9B6E912D37EC400DA6239 /* formatcolumn.cpp */, A7E9B6EA12D37EC400DA6239 /* formatcolumn.h */, A7E9B6EB12D37EC400DA6239 /* formatmatrix.h */, A7E9B6EC12D37EC400DA6239 /* formatphylip.cpp 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