validcalculator.h

   1 #ifndef VALIDCALCULATOR_H
   2 #define VALIDCALCULATOR_H
   3
   4 /*
   5  *  validcalculator.h
   6  *  Dotur
   7  *
   8  *  Created by Sarah Westcott on 1/5/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "mothurout.h"
  15
  16 //This class contains a list of all valid calculators in Mothur.
  17 //It has a function which will tell you if your calculator is valid for the given parameter.
  18 //When adding a new calculator you must add it to the valid list.
  19
  20
  21 class ValidCalculators {
  22         public:
  23                 ValidCalculators();
  24                 ~ValidCalculators();
  25                 bool isValidCalculator(string, string);
  26                 void printCalc(string, ostream&);
  27                 string printCalc(string);
  28                 void printCitations(vector<string>);
  29
  30         private:
  31                 map<string, string> single;
  32                 map<string, string> shared;
  33                 map<string, string> rarefaction;
  34                 map<string, string> summary;
  35                 map<string, string> sharedrarefaction;
  36                 map<string, string> sharedsummary;
  37                 map<string, string> vennsingle;
  38                 map<string, string> vennshared;
  39                 map<string, string> treegroup;
  40                 map<string, string> matrix;
  41                 map<string, string> heat;
  42                 map<string, string> boot;
  43                 map<string, string> distance;
  44                 map<string, string>::iterator it;
  45                 set<string> allCalcs;
  46
  47                 void initialSingle();
  48                 void initialShared();
  49                 void initialRarefaction();
  50                 void initialSharedRarefact();
  51                 void initialSummary();
  52                 void initialSharedSummary();
  53                 void initialVennSingle();
  54                 void initialVennShared();
  55                 void initialTreeGroups();
  56                 void initialMatrix();
  57                 void initialBoot();
  58                 void initialDistance();
  59                 void initialHeat();
  60
  61                 MothurOut* m;
  62 };
  63
  64 #endif