reportfile.h

   1 #ifndef REPORTFILE
   2 #define REPORTFILE
   3
   4 /*
   5  *  reportfile.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 7/12/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13
  14
  15 /**************************************************************************************************/
  16
  17 class ReportFile {
  18 public:
  19         ReportFile();
  20         ReportFile(ifstream&);
  21         ReportFile(ifstream&, string);
  22
  23         string getQueryName()                           {       return queryName;                               }
  24         string getTemplateName()                        {       return templateName;                    }
  25         string getSearchMethod()                        {       return searchMethod;                    }
  26         string getAlignmentMethod()                     {       return alignmentMethod;                 }
  27
  28         int getQueryLength()                            {       return queryLength;                             }
  29         int getTemplateLength()                         {       return templateLength;                  }
  30         int getQueryStart()                                     {       return queryStart;                              }
  31         int getQueryEnd()                                       {       return queryEnd;                                }
  32         int getTemplateStart()                          {       return templateStart;                   }
  33         int getTemplateEnd()                            {       return templateEnd;                             }
  34         int getPairwiseAlignmentLength()        {       return pairwiseAlignmentLength; }
  35         int getGapsInQuery()                            {       return gapsInQuery;                             }
  36         int getGapsInTemplate()                         {       return gapsInTemplate;                  }
  37         int getLongestInsert()                          {       return longestInsert;                   }
  38
  39         float getSearchScore()                          {       return searchScore;                             }
  40         float getSimBtwnQueryAndTemplate()      {       return simBtwnQueryAndTemplate; }
  41
  42
  43 private:
  44
  45         MothurOut* m;
  46
  47         string queryName, templateName, searchMethod, alignmentMethod, dummySearchScore;
  48         int queryLength, templateLength, queryStart, queryEnd, templateStart, templateEnd, pairwiseAlignmentLength, gapsInQuery, gapsInTemplate, longestInsert;
  49         float searchScore, simBtwnQueryAndTemplate;
  50
  51 };
  52
  53 /**************************************************************************************************/
  54
  55 #endif