regularizedrandomforest.h

   1 //
   2 //  regularizedrandomforest.h
   3 //  Mothur
   4 //
   5 //  Created by Kathryn Iverson on 11/16/12.
   6 //  Copyright (c) 2012 Schloss Lab. All rights reserved.
   7 //
   8
   9 #ifndef __Mothur__regularizedrandomforest__
  10 #define __Mothur__regularizedrandomforest__
  11
  12 #include "forest.h"
  13 #include "decisiontree.hpp"
  14
  15 class RegularizedRandomForest: public Forest {
  16 public:
  17     //
  18     RegularizedRandomForest(const vector <vector<int> > dataSet,const int numDecisionTrees, const string);
  19
  20     int calcForrestErrorRate();
  21     int calcForrestVariableImportance(string);
  22     int populateDecisionTrees();
  23     int updateGlobalOutOfBagEstimates(DecisionTree* decisionTree);
  24
  25 private:
  26     //
  27     MothurOut* m;
  28 };
  29
  30 #endif /* defined(__Mothur__regularizedrandomforest__) */