rarefact.h

   1 #ifndef RAREFACT_H
   2 #define RAREFACT_H
   3
   4 #include "rarefactioncurvedata.h"
   5 #include "raredisplay.h"
   6 #include "ordervector.hpp"
   7 #include "mothur.h"
   8
   9
  10 class Rarefact {
  11
  12 public:
  13         Rarefact(OrderVector* o, vector<Display*> disp, int p, set<int> en) :
  14                         numSeqs(o->getNumSeqs()), order(o), displays(disp), label(o->getLabel()), processors(p), ends(en)  { m = MothurOut::getInstance(); }
  15         Rarefact(vector<SharedRAbundVector*> shared, vector<Display*> disp) :
  16                                          lookup(shared), displays(disp) {  m = MothurOut::getInstance(); }
  17
  18         ~Rarefact(){};
  19         int getCurve(float, int);
  20         int getSharedCurve(float, int);
  21
  22 private:
  23
  24         OrderVector* order;
  25         vector<Display*> displays;
  26         int numSeqs, numGroupComb, processors;
  27         string label;
  28     set<int> ends;
  29         void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
  30         vector<SharedRAbundVector*> lookup;
  31         MothurOut* m;
  32
  33         int createProcesses(vector<int>&, RarefactionCurveData*, int);
  34         int driver(RarefactionCurveData*, int, int);
  35
  36 };
  37
  38
  39 #endif
  40