manhattan.cpp

   1 /*
   2  *  manhattan.cpp
   3  *  Mothur
   4  *
   5  *  Created by westcott on 12/15/10.
   6  *  Copyright 2010 Schloss Lab. All rights reserved.
   7  *
   8  */
   9
  10 #include "manhattan.h"
  11
  12 /***********************************************************************/
  13 EstOutput Manhattan::getValues(vector<SharedRAbundVector*> shared) {
  14         try {
  15                 data.resize(1,0);
  16
  17                 double sum = 0.0;
  18
  19                 for (int i = 0; i < shared[0]->getNumBins(); i++) {
  20
  21                         int Aij = shared[0]->getAbundance(i);
  22                         int Bij = shared[1]->getAbundance(i);
  23
  24                         sum += abs((Aij - Bij));
  25                 }
  26
  27                 data[0] = sum;
  28
  29                 if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
  30
  31                 return data;
  32         }
  33         catch(exception& e) {
  34                 m->errorOut(e, "Manhattan", "getValues");
  35                 exit(1);
  36         }
  37 }
  38 /***********************************************************************/