getlabelcommand.h

   1 #ifndef GETLABELCOMMAND_H
   2 #define GETLABELCOMMAND_H
   3
   4 /*
   5  *  getlabelcommand.h
   6  *  Mothur
   7  *
   8  *  Created by Thomas Ryabin on 1/30/09.
   9  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include "command.hpp"
  14 #include "ordervector.hpp"
  15 #include "inputdata.h"
  16
  17
  18 class GetlabelCommand : public Command {
  19 public:
  20         GetlabelCommand(string);
  21         GetlabelCommand();
  22         ~GetlabelCommand(){}
  23
  24         vector<string> setParameters();
  25         string getCommandName()                 { return "get.label";                           }
  26         string getCommandCategory()             { return "OTU-Based Approaches";        }
  27         string getHelpString();
  28     string getOutputPattern(string) { return ""; }
  29         string getCitation() { return "http://www.mothur.org/wiki/Get.label"; }
  30         string getDescription()         { return "outputs labels"; }
  31
  32
  33         int execute();
  34         void help() { m->mothurOut(getHelpString()); }
  35
  36
  37 private:
  38         string inputfile, listfile, rabundfile, sabundfile, format;
  39         bool abort;
  40         vector<string> outputNames;
  41 };
  42
  43 #endif