flowdata.h

   1 #ifndef FLOWDATA_H
   2 #define FLOWDATA_H
   3
   4 /*
   5  *  flowdata.h
   6  *  Mothur
   7  *
   8  *  Created by Pat Schloss on 12/22/10.
   9  *  Copyright 2010 Schloss Lab. All rights reserved.
  10  *
  11  */
  12
  13 #include "mothur.h"
  14 #include "mothurout.h"
  15 #include "sequence.hpp"
  16
  17 class FlowData {
  18
  19 public:
  20         FlowData();
  21         FlowData(int, float, float, int, string);
  22         ~FlowData();
  23         bool getNext(ifstream&);
  24         string getName();
  25         void capFlows(int);
  26         bool hasMinFlows(int);
  27     bool hasGoodHomoP();
  28
  29         Sequence getSequence();
  30
  31         void printFlows(ofstream&);
  32         void printFlows(ofstream&, string);
  33 private:
  34         MothurOut* m;
  35
  36         void updateEndFlow();
  37         void translateFlow();
  38         float signalIntensity, noiseIntensity;
  39         int maxHomoP;
  40         string seqName, locationString, sequence, baseFlow;
  41         int numFlows, maxFlows, endFlow;
  42         vector<float> flowData;
  43     string getSequenceName(ifstream&);
  44 };
  45
  46 #endif