collect.h

   1 #ifndef COLLECT_H
   2 #define COLLECT_H
   3
   4 #include "collectorscurvedata.h"
   5 #include "display.h"
   6 #include "ordervector.hpp"
   7 #include "sabundvector.hpp"
   8 #include "rabundvector.hpp"
   9 #include "sharedordervector.h"
  10 #include "datavector.hpp"
  11 #include "mothurout.h"
  12
  13 /***********************************************************************/
  14
  15 class Collect {
  16
  17 public:
  18         Collect(OrderVector* order, vector<Display*> disp) :
  19                                         numSeqs(order->getNumSeqs()), order(order), displays(disp), label(order->getLabel())  { m = MothurOut::getInstance(); };
  20         Collect(SharedOrderVector* sharedorder, vector<Display*> disp) :
  21                                         numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  { m = MothurOut::getInstance(); }
  22
  23         ~Collect(){             };
  24         int getCurve(float);
  25         int getSharedCurve(float);
  26
  27 private:
  28         SharedOrderVector* sharedorder;
  29         OrderVector* order;
  30         vector<Display*> displays;
  31         int numSeqs, numGroupComb, totalNumSeq;
  32         string label, groupLabel;
  33         void getGroupComb();
  34         vector<string> groupComb;
  35         bool validGroup(vector<string>, string);
  36         MothurOut* m;
  37 };
  38
  39
  40 #endif
  41