#!/usr/bin/make -f

all: fig_1.png fig_2.png fig_3.png fig_4.png fig_5.png paper_frontpage.png

paper_images: paper.pdf
	pdfimages -j -png $< paper
	touch $@

supplemental_images: supplemental_info.pdf
	pdfimages -j -png $< supplemental && touch $@

paper.pdf:
	wget -O $@ "http://download.springer.com/static/pdf/329/art%253A10.1186%252Fs13059-016-0997-x.pdf?originUrl=http%3A%2F%2Fgenomebiology.biomedcentral.com%2Farticle%2F10.1186%2Fs13059-016-0997-x&token2=exp=1466533957~acl=%2Fstatic%2Fpdf%2F329%2Fart%25253A10.1186%25252Fs13059-016-0997-x.pdf*~hmac=9273fd8d3eace11243411b29e4939168805da42e97cb7668f1fedd782d4389e8"

paper_frontpage.png: paper.pdf
	convert -density 300 -depth 8 -quality 85 -crop '2100x1600+200+100' '$<[0]' $@

fig_%.gif:
	wget -O $@ "https://static-content.springer.com/image/art%3A10.1186%2Fs13059-016-0997-x/MediaObjects/13059_2016_997_Fig$(*)_HTML.gif"


fig_%.png: fig_%.gif
	convert -trim +repage $< $@

supplemental_info.pdf:
	wget -O $@ "https://static-content.springer.com/esm/art%3A10.1186%2Fs13059-016-0997-x/MediaObjects/13059_2016_997_MOESM1_ESM.pdf"