add start of latex shell

diff --git a/templates/latex_shell.Rnw b/templates/latex_shell.Rnw
new file mode 100644 (file)
index 0000000..0957b91
--- /dev/null
+++ b/templates/latex_shell.Rnw
@@ -0,0 +1,98 @@
+\documentclass[english,12pt]{article}
+\usepackage{fontspec}
+\setmainfont{FreeSerif}
+\setsansfont{FreeSans}
+\setmonofont{FreeMono}
+\usepackage[letterpaper,left=1in,right=1in,top=1in,bottom=1in,headheight=14pt]{geometry}
+\usepackage{url}
+\usepackage{fancyhdr}
+\usepackage{graphicx}
+\usepackage[bf]{caption}
+\usepackage{rotating}
+\usepackage{wrapfig}
+\usepackage{booktabs}
+\usepackage{float}
+\usepackage{multirow}
+\usepackage{setspace}
+\usepackage{txfonts}
+%\usepackage{fancyref}
+\usepackage{acronym}
+\usepackage{array}
+\usepackage{dcolumn}
+\usepackage{adjustbox}
+\usepackage{longtable}
+\usepackage{pdflscape}
+\usepackage[backend=biber,natbib=true,hyperref=true,style=numeric-comp]{biblatex}
+\addbibresource{references.bib}
+%\usepackage[noblocks]{authblk}
+\usepackage[hyperfigures,bookmarks,colorlinks]{hyperref}
+%\usepackage[hyperfigures,bookmarks,colorlinks,citecolor=black,filecolor=black,linkcolor=black,urlcolor=black]{hyperref}
+% Floats at end for journals
+% \usepackage[nolists,figuresfirst,nomarkers,heads,nofighead,notabhead]{endfloat}
+% \AtBeginFigures{\section*{Figure Legends}\renewcommand{\efloatseparator}{\hbox{}}}
+% \AtBeginTables{\section*{Tables}\renewcommand{\efloatseparator}{\mbox{}}}
+\usepackage[nomargin,inline,draft]{fixme}
+\newcommand{\DLA}[1]{\textcolor{red}{\fxnote{DLA: #1}}}
+\usepackage[x11names,svgnames]{xcolor}
+\usepackage{texshade}
+\usepackage{tikz}
+\usepackage{nameref}
+\usepackage{zref-xr,zref-user}
+\newenvironment{narrow}[2]{%
+  \begin{list}{}{%
+      \setlength{\topsep}{0pt}%
+      \setlength{\leftmargin}{#1}%
+      \setlength{\rightmargin}{#2}%
+      \setlength{\listparindent}{\parindent}%
+      \setlength{\itemindent}{\parindent}%
+      \setlength{\parsep}{\parskip}}%
+  \item[]}{\end{list}}
+\def\newblock{\hskip}
+\newenvironment{paperquote}{%
+  \begin{quote}%
+     \it
+  }%
+  {\end{quote}}
+\renewcommand{\textfraction}{0.15}
+\renewcommand{\topfraction}{0.85}
+\renewcommand{\bottomfraction}{0.65}
+\renewcommand{\floatpagefraction}{0.60}
+%\renewcommand{\baselinestretch}{1.8}
+\newenvironment{enumerate*}%
+  {\begin{enumerate}%
+    \setlength{\itemsep}{0pt}%
+    \setlength{\parskip}{0pt}}%
+  {\end{enumerate}}
+\newenvironment{itemize*}%
+  {\begin{itemize}%
+    \setlength{\itemsep}{0pt}%
+    \setlength{\parskip}{0pt}}%
+  {\end{itemize}}
+\oddsidemargin 0.0in 
+\textwidth 6.5in
+\raggedbottom
+\clubpenalty = 10000
+\widowpenalty = 10000
+\pagestyle{fancy}
+\author{AUTHOR}
+\title{TITLE}
+\date{\ }
+\onehalfspacing
+                 
+\begin{document}
+
+<<load.libraries,echo=FALSE,results="hide",warning=FALSE,message=FALSE,error=FALSE,cache=FALSE>>=
+opts_chunk$set(dev="cairo_pdf",out.width="\\textwidth",out.height="0.7\\textheight",out.extra="keepaspectratio")
+#opts_chunk$set(cache=TRUE, autodep=TRUE)
+options(device = function(file, width = 8, height = 7, ...) {
+  cairo_pdf(tempfile(), width = width, height = height, ...)
+})
+library("data.table")
+library("ggplot2")
+library("reshape2")
+library("proto")
+@ 
+
+
+
+\end{document}