From: Don Armstrong Date: Fri, 8 May 2015 18:03:23 +0000 (-0700) Subject: add imprinted genes and imprinted genes information X-Git-Url: https://git.donarmstrong.com/?p=imprinted_genes.git;a=commitdiff_plain;h=717b093feeae46252f82a76a6f955a0c898d237d add imprinted genes and imprinted genes information --- diff --git a/Makefile b/Makefile index b87aa21..18dfbad 100644 --- a/Makefile +++ b/Makefile @@ -16,5 +16,8 @@ geneimprint_human.txt: geneimprint_human.html parse_geneimprint.pl parent_of_origin.txt: parent_of_origin.html parse_parent_of_origin.pl ./parse_parent_of_origin.pl $< > $@ -combined_imprinted_genes.txt: combine_imprinted_genes.R geneimprint_human.txt parent_of_origin.txt +imprinted_genes.txt: combine_imprinted_genes.R geneimprint_human.txt parent_of_origin.txt $(R) $(ROPTS) -f $< --args $(wordlist 2,$(words $^),$^) $@ + +imprinted_genes_information.txt: imprinted_genes.txt + ~/projects/chaim/bin/gene_info < $< > $@ diff --git a/README.md b/README.md index dca29a8..e473ad8 100644 --- a/README.md +++ b/README.md @@ -22,4 +22,7 @@ Catalog of Parent of Origin Effects Database Combined Data Files =================== +imprinted_genes.txt -- contains a list of the imprinted genes +imprinted_genes_information.txt -- contains the information for the +list of the imprinted genes diff --git a/imprinted_genes.txt b/imprinted_genes.txt new file mode 100644 index 0000000..65c1491 --- /dev/null +++ b/imprinted_genes.txt @@ -0,0 +1,303 @@ +AIM1 +AMPD3 +ANO1 +APC +APS +ASB4 +ASCL2 +ATXN7 +AWT1 +BDNF +BEGAIN +BLCAP +BRD2 +C19MC +CALCR +CASD1 +CD44 +CD81 +CDKN1C +CNTNAP2 +COMMD1 +COPG2 +COPG2IT1 +CPA4 +CTNNA3 +DCN +DDC +DHCR7 +DIO3 +DIRAS3 +DLGAP2 +DLK1 +DLX5 +DNMT1 +DSCR3 +EPS15 +FLJ13639 +GAB1 +GABRB3 +GNAL +GNAS1 +GNGT1 +GPR1 +GRB10 +H19 +H73492 +HFE +HM13 +HTR2A +HYMAI +IDDM10 +IDDM8 +IGF2 +IGF2AS +IGF2R +IL4R +IMPACT +INPP5F +INS +ITUP1 +KCNK9 +KCNQ1 +KCNQ1DN +KCNQ1OT1 +KLF14 +L211 +L3MBTL +LGALS14 +LGALS8 +LIN28B +LRRTM1 +MAGEL2 +MAGI2 +MAS1 +MEG3 +MEG8 +MEST +MESTIT1 +MIR483 +MKRN3 +MS4A2 +MYCN +NAA60 +NAP1L5 +NDN +NDUFAF4 +NLRP2 +NNAT +NPAP1 +NTM +OSBPL1A +OSBPL5 +PAPPA2 +PDGFC +PEG10 +PEG3 +PHACTR2 +PHF11 +PHLDA2 +PLAGL1 +PON1 +PON2 +PON3 +PPP1R9A +PRIM2 +PWRN1 +PWRN2 +RASGRF1 +RASSF1 +RB1 +RHOBTB3 +RTL1 +SBK1 +SCA8 +SDHD +SFMBT2 +SFRP2 +SGCE +SLC22A18AS +SLC22A2 +SLC22A3 +SLC38A4 +SMPD1 +SNURF +SPINK5 +SPTLC3 +STOX1 +TCEB3C +TCOF1 +TFPI2 +TGFB3 +TH +TP73 +TRPM5 +TSPAN32 +TSPEAR +TSSC4 +U2AF1L1 +UBE3A +UPD +USP29 +W89101 +WIF1 +ZFAT +ZNF215 +ZNF331 +ZNF597 +ABCC9 +ABCG8 +ACD +ADAMTS16 +ALDH1L1 +APBA1 +ATP10A +B4GALNT4 +BMP8B +BRP44L +BRUNOL4 +BTNL2 +C10orf91 +C10orf93 +C16orf57 +C20orf20 +C20orf82 +C6orf117 +C9orf116 +C9orf85 +CCDC85A +CDH18 +CDK4 +CHMP2A +CHST8 +COL9A3 +CSF2 +CYP1B1 +DGCR6 +DGCR6L +DVL1 +E2F7 +EGFL7 +EVX1 +FAM50B +FAM59A +FAM70B +FASTK +FBRSL1 +FERMT2 +FGFRL1 +FLJ20464 +FLJ40296 +FLJ46321 +FOXF1 +FOXG1 +FUCA1 +GABRA5 +GABRG3 +GATA3 +GATM +GDAP1L1 +GFI1 +GLI3 +GLIS3 +GNAS +GNASAS +GPT +HES1 +HIST3H2BB +HOXA11 +HOXA2 +HOXA3 +HOXA4 +HOXA5 +HOXB2 +HOXB3 +HOXC4 +HOXC9 +HSPA6 +IFITM1 +INPP5F V2 +IRAIN +ISM1 +KBTBD3 +KIAA1530 +KIAA1545 +LDB1 +LILRB4 +LMX1B +LOC100131170 +LY6D +MCTS2 +MIMT1 +MIR184 +MIR296 +MIR298 +MIR371A +MRAP2 +MYEOV2 +MZF1 +NAP1L4 +NDUFA4P1 +NKAIN3 +NKX6-2 +OBSCN +OR11L1 +OTX1 +PAOX +PEG13 +PEX10 +PHPT1 +PKP3 +PPAP2C +PRDM16 +PSIMCT-1 +PTPN14 +PURG +PWCR1 +PYY2 +RAB1B +RBP5 +RNU5D-1 +RPL22 +SALL1 +SANG +SGK2 +SIM2 +SLC22A18 +SLC22A2* +SLC22A3* +SLC26A10 +SLC4A2 +SNORD107 +SNORD108 +SNORD109A +SNORD109B +SNORD115-48 +SNORD115@ +SNORD116@ +SNORD64 +SNRPN +SOX8 +SPON2 +TIGD1 +TMEM52 +TMEM60 +TMEM88 +TSHZ3 +TSIX +VAX2 +VENTX +WDR8 +WT1-Alt trans +XIST +ZC3H12C +ZDBF2 +ZFAT-AS1 +ZFP36L2 +ZIC1 +ZIM2 +ZIM3 +ZNF127AS +ZNF225 +ZNF229 +ZNF264 diff --git a/imprinted_genes_information.txt b/imprinted_genes_information.txt new file mode 100644 index 0000000..505a982 --- /dev/null +++ b/imprinted_genes_information.txt @@ -0,0 +1,304 @@ +gene chr ideogram complement start stop name +AIM1 6 6q21 0 106959730 107018335 absent in melanoma 1 +AMPD3 11 11p15.4 0 10471868 10529126 adenosine monophosphate deaminase 3 +ANO1 11 11q13.3 0 69924408 70035651 anoctamin 1, calcium activated chloride channel +APC 5 5q22.2 0 112043202 112181936 adenomatous polyposis coli +APS NA NA NA NA NA NA +ASB4 7 7q21.3 0 95115213 95169543 ankyrin repeat and SOCS box containing 4 +ASCL2 11 11p15.5 1 2289728 2292182 achaete-scute complex homolog 2 (Drosophila) +ATXN7 3 3p14.1 0 63850233 63989138 ataxin 7 +AWT1 NA NA NA NA NA NA +BDNF 11 11p14.1 1 27676440 27743605 brain-derived neurotrophic factor +BEGAIN 14 14q32.2 1 101003484 101036131 brain-enriched guanylate kinase-associated homolog (rat) +BLCAP 20 20q11.23 1 36145819 36156333 bladder cancer associated protein +BRD2 6 6p21.32 0 32936437 32949282 bromodomain containing 2 +C19MC NA NA NA NA NA NA +CALCR 7 7q21.3 1 93053799 93204042 calcitonin receptor +CASD1 7 7q21.3 0 94139170 94186331 CAS1 domain containing 1 +CD44 11 11p13 0 35160417 35253949 CD44 molecule (Indian blood group) +CD81 11 11p15.5 0 2398547 2418649 CD81 molecule +CDKN1C 11 11p15.4 1 2904448 2906995 cyclin-dependent kinase inhibitor 1C (p57, Kip2) +CNTNAP2 7 7q35 0 145813453 148118090 contactin associated protein-like 2 +COMMD1 2 2p15 0 62132803 62363205 copper metabolism (Murr1) domain containing 1 +COPG2 7 7q32.2 1 130146079 130353598 coatomer protein complex, subunit gamma 2 +COPG2IT1 NA NA NA NA NA NA +CPA4 7 7q32.2 0 129932974 129964020 carboxypeptidase A4 +CTNNA3 10 10q21.3 1 67679725 69455949 catenin (cadherin-associated protein), alpha 3 +DCN 12 12q21.33 1 91539035 91576806 decorin +DDC 7 7p12.1 1 50526134 50633154 dopa decarboxylase (aromatic L-amino acid decarboxylase) +DHCR7 11 11q13.4 1 71145457 71159477 7-dehydrocholesterol reductase +DIO3 14 14q32.31 0 102027688 102029789 deiodinase, iodothyronine, type III +DIRAS3 1 1p31.3 1 68511645 68516460 DIRAS family, GTP-binding RAS-like 3 +DLGAP2 8 8p23.3 0 1449569 1656642 discs, large (Drosophila) homolog-associated protein 2 +DLK1 14 14q32.2 0 101193202 101201467 delta-like 1 homolog (Drosophila) +DLX5 7 7q21.3 1 96649702 96654143 distal-less homeobox 5 +DNMT1 19 19p13.2 1 10244022 10305755 DNA (cytosine-5-)-methyltransferase 1 +DSCR3 21 21q22.13 1 38595726 38639833 Down syndrome critical region gene 3 +EPS15 1 1p32.3 1 51819935 51984995 epidermal growth factor receptor pathway substrate 15 +FLJ13639 NA NA NA NA NA NA +GAB1 4 4q31.21 0 144257983 144395718 GRB2-associated binding protein 1 +GABRB3 15 15q12 1 26788693 27018935 gamma-aminobutyric acid (GABA) A receptor, beta 3 +GNAL 18 18p11.21 0 11689136 11883144 guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type +GNAS1 NA NA NA NA NA NA +GNGT1 7 7q21.3 0 93535820 93540485 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 +GPR1 2 2q33.3 1 207040040 207082771 G protein-coupled receptor 1 +GRB10 7 7p12.1 1 50657760 50861159 growth factor receptor-bound protein 10 +H19 NA NA NA NA NA NA +H73492 NA NA NA NA NA NA +HFE 6 6p22.2 0 26087509 26095469 hemochromatosis +HM13 20 20q11.21 0 30102241 30157370 histocompatibility (minor) 13 +HTR2A 13 13q14.2 1 47407513 47471169 5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled +HYMAI NA NA NA NA NA NA +IDDM10 NA NA NA NA NA NA +IDDM8 NA NA NA NA NA NA +IGF2 11 11p15.5 1 2150347 2170833 insulin-like growth factor 2 (somatomedin A) +IGF2AS NA NA NA NA NA NA +IGF2R 6 6q25.3 0 160390131 160527583 insulin-like growth factor 2 receptor +IL4R 16 16p12.1 0 27325251 27376099 interleukin 4 receptor +IMPACT 18 18q11.2 0 22006609 22033495 Impact homolog (mouse) +INPP5F 10 10q26.11 0 121485609 121588659 inositol polyphosphate-5-phosphatase F +INS 11 11p15.5 1 2181009 2182439 insulin +ITUP1 NA NA NA NA NA NA +KCNK9 8 8q24.3 1 140624804 140715299 potassium channel, subfamily K, member 9 +KCNQ1 11 11p15.5 0 2466221 2870340 potassium voltage-gated channel, KQT-like subfamily, member 1 +KCNQ1DN NA NA NA NA NA NA +KCNQ1OT1 NA NA NA NA NA NA +KLF14 7 7q32.3 1 130417396 130418888 Kruppel-like factor 14 +L211 NA NA NA NA NA NA +L3MBTL NA NA NA NA NA NA +LGALS14 19 19q13.2 0 40194946 40200088 lectin, galactoside-binding, soluble, 14 +LGALS8 1 1q43 0 236681514 236716281 lectin, galactoside-binding, soluble, 8 +LIN28B 6 6q16.3 0 105404923 105531206 lin-28 homolog B (C. elegans) +LRRTM1 2 2p12 1 80529003 80531487 leucine rich repeat transmembrane neuronal 1 +MAGEL2 15 15q11.2 1 23888696 23892993 MAGE-like 2 +MAGI2 7 7q21.11 1 77646374 79082890 membrane associated guanylate kinase, WW and PDZ domain containing 2 +MAS1 6 6q25.3 0 160327974 160329108 MAS1 oncogene +MEG3 NA NA NA NA NA NA +MEG8 NA NA NA NA NA NA +MEST 7 7q32.2 0 130126046 130146133 mesoderm specific transcript homolog (mouse) +MESTIT1 NA NA NA NA NA NA +MIR483 NA NA NA NA NA NA +MKRN3 15 15q11.2 0 23810454 23813167 makorin ring finger protein 3 +MS4A2 11 11q12.1 0 59856137 59865940 membrane-spanning 4-domains, subfamily A, member 2 +MYCN 2 2p24.3 0 16080683 16087129 v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) +NAA60 NA NA NA NA NA NA +NAP1L5 4 4q22.1 1 89617066 89619023 nucleosome assembly protein 1-like 5 +NDN 15 15q11.2 1 23930554 23932450 necdin homolog (mouse) +NDUFAF4 6 6q16.1 1 97337187 97345767 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4 +NLRP2 19 19q13.42 0 55476652 55512510 NLR family, pyrin domain containing 2 +NNAT 20 20q11.23 0 36149607 36152092 neuronatin +NPAP1 NA NA NA NA NA NA +NTM 11 11q25 0 131240371 132206716 neurotrimin +OSBPL1A 18 18q11.2 1 21742009 21977833 oxysterol binding protein-like 1A +OSBPL5 11 11p15.4 1 3108346 3186582 oxysterol binding protein-like 5 +PAPPA2 1 1q25.2 0 176432307 176811972 pappalysin 2 +PDGFC 4 4q32.1 1 157682763 157892546 platelet derived growth factor C +PEG10 7 7q21.3 0 94285637 94299007 paternally expressed 10 +PEG3 19 19q13.43 1 57321445 57352094 paternally expressed 3 +PHACTR2 6 6q24.2 0 143929317 144152322 phosphatase and actin regulator 2 +PHF11 13 13q14.2 0 50069801 50103117 PHD finger protein 11 +PHLDA2 11 11p15.4 1 2949503 2950650 pleckstrin homology-like domain, family A, member 2 +PLAGL1 6 6q24.2 1 144261437 144385735 pleiomorphic adenoma gene-like 1 +PON1 7 7q21.3 1 94927669 94953884 paraoxonase 1 +PON2 7 7q21.3 1 95034174 95064384 paraoxonase 2 +PON3 7 7q21.3 1 94989184 95025687 paraoxonase 3 +PPP1R9A 7 7q21.3 0 94536949 94925727 protein phosphatase 1, regulatory subunit 9A +PRIM2 6 6p11.2 0 57182415 57512702 primase, DNA, polypeptide 2 (58kDa) +PWRN1 NA NA NA NA NA NA +PWRN2 NA NA NA NA NA NA +RASGRF1 15 15q25.1 1 79252289 79383215 Ras protein-specific guanine nucleotide-releasing factor 1 +RASSF1 3 3p21.31 1 50367217 50378367 Ras association (RalGDS/AF-6) domain family member 1 +RB1 13 13q14.2 0 48877883 49056026 retinoblastoma 1 +RHOBTB3 5 5q15 0 95066850 95132071 Rho-related BTB domain containing 3 +RTL1 14 14q32.2 1 101346992 101351184 retrotransposon-like 1 +SBK1 16 16p11.2 0 28303840 28335170 SH3-binding domain kinase 1 +SCA8 NA NA NA NA NA NA +SDHD 11 11q23.1 0 111957571 111966518 succinate dehydrogenase complex, subunit D, integral membrane protein +SFMBT2 10 10p14 1 7200586 7453448 Scm-like with four mbt domains 2 +SFRP2 4 4q31.3 1 154701742 154710228 secreted frizzled-related protein 2 +SGCE 7 7q21.3 1 94214536 94285521 sarcoglycan, epsilon +SLC22A18AS 11 11p15.4 1 2909327 2925175 solute carrier family 22 (organic cation transporter), member 18 antisense +SLC22A2 6 6q25.3 1 160637794 160679963 solute carrier family 22 (organic cation transporter), member 2 +SLC22A3 6 6q25.3 0 160769425 160876014 solute carrier family 22 (extraneuronal monoamine transporter), member 3 +SLC38A4 12 12q13.11 1 47158544 47219780 solute carrier family 38, member 4 +SMPD1 11 11p15.4 0 6411644 6416228 sphingomyelin phosphodiesterase 1, acid lysosomal +SNURF 15 15q11.2 0 25200070 25223729 SNRPN upstream reading frame +SPINK5 5 5q32 0 147443535 147516925 serine peptidase inhibitor, Kazal type 5 +SPTLC3 20 20p12.1 0 12989627 13147411 serine palmitoyltransferase, long chain base subunit 3 +STOX1 10 10q21.3 0 70587294 70655209 storkhead box 1 +TCEB3C 18 18q21.1 1 44554573 44556449 transcription elongation factor B polypeptide 3C (elongin A3) +TCOF1 5 5q32 0 149737202 149779871 Treacher Collins-Franceschetti syndrome 1 +TFPI2 7 7q21.3 1 93515745 93520065 tissue factor pathway inhibitor 2 +TGFB3 14 14q24.3 1 76424442 76448092 transforming growth factor, beta 3 +TH 11 11p15.5 1 2185159 2193035 tyrosine hydroxylase +TP73 1 1p36.32 0 3569129 3652765 tumor protein p73 +TRPM5 11 11p15.5 1 2425745 2444275 transient receptor potential cation channel, subfamily M, member 5 +TSPAN32 11 11p15.5 0 2323243 2339430 tetraspanin 32 +TSPEAR 21 21q22.3 1 45917775 46131495 thrombospondin-type laminin G domain and EAR repeats +TSSC4 11 11p15.5 0 2423523 2425106 tumor suppressing subtransferable candidate 4 +U2AF1L1 NA NA NA NA NA NA +UBE3A 15 15q11.2 1 25582396 25684175 ubiquitin protein ligase E3A +UPD NA NA NA NA NA NA +USP29 19 19q13.43 0 57631509 57643294 ubiquitin specific peptidase 29 +W89101 NA NA NA NA NA NA +WIF1 12 12q14.3 1 65444404 65515346 WNT inhibitory factor 1 +ZFAT 8 8q24.22 1 135490031 135725292 zinc finger and AT hook domain containing +ZNF215 11 11p15.4 0 6947654 6979278 zinc finger protein 215 +ZNF331 19 19q13.42 0 54024177 54083523 zinc finger protein 331 +ZNF597 16 16p13.3 1 3486110 3493490 zinc finger protein 597 +ABCC9 12 12p12.1 1 21950323 22089628 ATP-binding cassette, sub-family C (CFTR/MRP), member 9 +ABCG8 2 2p21 0 44066103 44105605 ATP-binding cassette, sub-family G (WHITE), member 8 +ACD 16 16q22.1 1 67691415 67694718 adrenocortical dysplasia homolog (mouse) +ADAMTS16 5 5p15.32 0 5140443 5320412 ADAM metallopeptidase with thrombospondin type 1 motif, 16 +ALDH1L1 3 3q21.3 1 125822408 125899485 aldehyde dehydrogenase 1 family, member L1 +APBA1 9 9q21.11 1 72042449 72287275 amyloid beta (A4) precursor protein-binding, family A, member 1 +ATP10A 15 15q12 1 25923859 26108349 ATPase, class V, type 10A +B4GALNT4 11 11p15.5 0 369795 382117 beta-1,4-N-acetyl-galactosaminyl transferase 4 +BMP8B 1 1p34.2 1 40223903 40254533 bone morphogenetic protein 8b +BRP44L 6 6q27 1 166778407 166796486 brain protein 44-like +BRUNOL4 NA NA NA NA NA NA +BTNL2 6 6p21.32 1 32362513 32374900 butyrophilin-like 2 (MHC class II associated) +C10orf91 10 10q26.3 0 134258714 134261825 chromosome 10 open reading frame 91 +C10orf93 10 10q26.3 1 134742689 134756089 NA +C16orf57 16 16q21 0 58035277 58055527 chromosome 16 open reading frame 57 +C20orf20 20 20q13.33 0 61427805 61431945 chromosome 20 open reading frame 20 +C20orf82 NA NA NA NA NA NA +C6orf117 NA NA NA NA NA NA +C9orf116 9 9q34.3 1 138387026 138391761 chromosome 9 open reading frame 116 +C9orf85 9 9q21.13 0 74526423 74588373 chromosome 9 open reading frame 85 +CCDC85A 2 2p16.1 0 56411258 56613309 coiled-coil domain containing 85A +CDH18 5 5p14.3 1 19473140 19988353 cadherin 18, type 2 +CDK4 12 12q14.1 1 58142003 58146164 cyclin-dependent kinase 4 +CHMP2A 19 19q13.43 1 59062933 59066486 charged multivesicular body protein 2A +CHST8 19 19q13.11 0 34112861 34264414 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8 +COL9A3 20 20q13.33 0 61448414 61472511 collagen, type IX, alpha 3 +CSF2 5 5q31.1 0 131409485 131411859 colony stimulating factor 2 (granulocyte-macrophage) +CYP1B1 2 2p22.2 1 38294746 38303323 cytochrome P450, family 1, subfamily B, polypeptide 1 +DGCR6 22 22q11.21 0 18893736 18899601 DiGeorge syndrome critical region gene 6 +DGCR6L 22 22q11.21 1 20301761 20307628 DiGeorge syndrome critical region gene 6-like +DVL1 1 1p36.33 1 1270658 1284492 dishevelled, dsh homolog 1 (Drosophila) +E2F7 12 12q21.2 1 77415026 77459360 E2F transcription factor 7 +EGFL7 9 9q34.3 0 139557377 139567130 EGF-like-domain, multiple 7 +EVX1 7 7p15.2 0 27282164 27286192 even-skipped homeobox 1 +FAM50B 6 6p25.2 0 3849632 3851551 family with sequence similarity 50, member B +FAM59A 18 18q12.1 1 29843484 30050447 family with sequence similarity 59, member A +FAM70B 13 13q34 0 114462216 114514899 family with sequence similarity 70, member B +FASTK 7 7q36.1 1 150773708 150777951 Fas-activated serine/threonine kinase +FBRSL1 12 12q24.33 0 133067157 133161774 fibrosin-like 1 +FERMT2 14 14q22.1 1 53323989 53417815 fermitin family member 2 +FGFRL1 4 4p16.3 0 1005610 1020686 fibroblast growth factor receptor-like 1 +FLJ20464 NA NA NA NA NA NA +FLJ40296 NA NA NA NA NA NA +FLJ46321 NA NA NA NA NA NA +FOXF1 16 16q24.1 0 86544133 86548070 forkhead box F1 +FOXG1 14 14q12 0 29236287 29238871 forkhead box G1 +FUCA1 1 1p36.11 1 24171567 24194859 fucosidase, alpha-L- 1, tissue +GABRA5 15 15q12 0 27111866 27194357 gamma-aminobutyric acid (GABA) A receptor, alpha 5 +GABRG3 15 15q12 0 27216429 27778373 gamma-aminobutyric acid (GABA) A receptor, gamma 3 +GATA3 10 10p14 0 8096667 8117164 GATA binding protein 3 +GATM 15 15q21.1 1 45653322 45670980 glycine amidinotransferase (L-arginine:glycine amidinotransferase) +GDAP1L1 20 20q13.12 0 42875908 42909013 ganglioside induced differentiation associated protein 1-like 1 +GFI1 1 1p22.1 1 92940318 92952433 growth factor independent 1 transcription repressor +GLI3 7 7p14.1 1 42000547 42276618 GLI family zinc finger 3 +GLIS3 9 9p24.2 1 3824128 4300035 GLIS family zinc finger 3 +GNAS 20 20q13.32 0 57414795 57486250 GNAS complex locus +GNASAS NA NA NA NA NA NA +GPT 8 8q24.3 0 145729465 145732555 glutamic-pyruvate transaminase (alanine aminotransferase) +HES1 3 3q29 0 193853931 193856401 hairy and enhancer of split 1, (Drosophila) +HIST3H2BB 1 1q42.13 0 228645808 228646259 histone cluster 3, H2bb +HOXA11 7 7p15.2 1 27220776 27224835 homeobox A11 +HOXA2 7 7p15.2 1 27139973 27142394 homeobox A2 +HOXA3 7 7p15.2 1 27145809 27166639 homeobox A3 +HOXA4 7 7p15.2 1 27168126 27170399 homeobox A4 +HOXA5 7 7p15.2 1 27180671 27183287 homeobox A5 +HOXB2 17 17q21.32 1 46620017 46622393 homeobox B2 +HOXB3 17 17q21.32 1 46626232 46651810 homeobox B3 +HOXC4 12 12q13.13 0 54410642 54449814 homeobox C4 +HOXC9 12 12q13.13 0 54393877 54397121 homeobox C9 +HSPA6 1 1q23.3 0 161494036 161496687 heat shock 70kDa protein 6 (HSP70B') +IFITM1 11 11p15.5 0 313991 315272 interferon induced transmembrane protein 1 +INPP5F V2 NA NA NA NA NA NA +IRAIN NA NA NA NA NA NA +ISM1 20 20p12.1 0 13202418 13281297 isthmin 1 homolog (zebrafish) +KBTBD3 11 11q22.3 1 105921825 105948465 kelch repeat and BTB (POZ) domain containing 3 +KIAA1530 4 4p16.3 0 1341104 1381837 KIAA1530 +KIAA1545 NA NA NA NA NA NA +LDB1 10 10q24.32 1 103867317 103880210 LIM domain binding 1 +LILRB4 19 19q13.42 0 55174124 55179848 leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4 +LMX1B 9 9q33.3 0 129376722 129463311 LIM homeobox transcription factor 1, beta +LOC100131170 NA NA NA NA NA NA +LY6D 8 8q24.3 1 143866298 143868008 lymphocyte antigen 6 complex, locus D +MCTS2 NA NA NA NA NA NA +MIMT1 NA NA NA NA NA NA +MIR184 NA NA NA NA NA NA +MIR296 NA NA NA NA NA NA +MIR298 NA NA NA NA NA NA +MIR371A NA NA NA NA NA NA +MRAP2 6 6q14.2 0 84743420 84800606 melanocortin 2 receptor accessory protein 2 +MYEOV2 2 2q37.3 1 241065980 241075764 myeloma overexpressed 2 +MZF1 19 19q13.43 1 59073284 59084942 myeloid zinc finger 1 +NAP1L4 11 11p15.4 1 2965660 3013607 nucleosome assembly protein 1-like 4 +NDUFA4P1 NA NA NA NA NA NA +NKAIN3 8 8q12.3 0 63161501 63903628 Na+/K+ transporting ATPase interacting 3 +NKX6-2 10 10q26.3 1 134598320 134599537 NK6 homeobox 2 +OBSCN 1 1q42.13 0 228395861 228566575 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF +OR11L1 1 1q44 1 248004230 248005198 olfactory receptor, family 11, subfamily L, member 1 +OTX1 2 2p15 0 63277192 63284966 orthodenticle homeobox 1 +PAOX 10 10q26.3 0 135192741 135205198 polyamine oxidase (exo-N4-amino) +PEG13 NA NA NA NA NA NA +PEX10 1 1p36.32 1 2336241 2344010 peroxisomal biogenesis factor 10 +PHPT1 9 9q34.3 0 139743256 139745490 phosphohistidine phosphatase 1 +PKP3 11 11p15.5 0 394217 404908 plakophilin 3 +PPAP2C 19 19p13.3 1 281043 291435 phosphatidic acid phosphatase type 2C +PRDM16 1 1p36.32 0 2985742 3355185 PR domain containing 16 +PSIMCT-1 NA NA NA NA NA NA +PTPN14 1 1q41 1 214522039 214725024 protein tyrosine phosphatase, non-receptor type 14 +PURG 8 8p12 1 30853321 30891231 purine-rich element binding protein G +PWCR1 NA NA NA NA NA NA +PYY2 NA NA NA NA NA NA +RAB1B 11 11q13.2 0 66036056 66044963 RAB1B, member RAS oncogene family +RBP5 12 12p13.31 1 7276280 7281466 retinol binding protein 5, cellular +RNU5D-1 NA NA NA NA NA NA +RPL22 1 1p36.31 1 6245080 6259679 ribosomal protein L22 +SALL1 16 16q12.1 1 51169886 51185183 sal-like 1 (Drosophila) +SANG NA NA NA NA NA NA +SGK2 20 20q13.12 0 42187635 42214273 serum/glucocorticoid regulated kinase 2 +SIM2 21 21q22.13 0 38071991 38122510 single-minded homolog 2 (Drosophila) +SLC22A18 11 11p15.4 0 2920951 2946476 solute carrier family 22, member 18 +SLC22A2* NA NA NA NA NA NA +SLC22A3* NA NA NA NA NA NA +SLC26A10 12 12q13.3 0 58013693 58019934 solute carrier family 26, member 10 +SLC4A2 7 7q36.1 0 150755299 150773614 solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1) +SNORD107 NA NA NA NA NA NA +SNORD108 NA NA NA NA NA NA +SNORD109A NA NA NA NA NA NA +SNORD109B NA NA NA NA NA NA +SNORD115-48 NA NA NA NA NA NA +SNORD115@ NA NA NA NA NA NA +SNORD116@ NA NA NA NA NA NA +SNORD64 NA NA NA NA NA NA +SNRPN 15 15q11.2 0 25068794 25223729 small nuclear ribonucleoprotein polypeptide N +SOX8 16 16p13.3 0 1031808 1036979 SRY (sex determining region Y)-box 8 +SPON2 4 4p16.3 1 1160720 1202750 spondin 2, extracellular matrix protein +TIGD1 2 2q37.1 1 233412779 233415226 tigger transposable element derived 1 +TMEM52 1 1p36.33 1 1849029 1850740 transmembrane protein 52 +TMEM60 7 7q11.23 1 77423045 77427747 transmembrane protein 60 +TMEM88 17 17p13.1 0 7758384 7759417 transmembrane protein 88 +TSHZ3 19 19q12 1 31765851 31840190 teashirt zinc finger homeobox 3 +TSIX NA NA NA NA NA NA +VAX2 2 2p13.3 0 71127720 71160576 ventral anterior homeobox 2 +VENTX 10 10q26.3 0 135051408 135055433 VENT homeobox +WDR8 NA NA NA NA NA NA +WT1-Alt trans NA NA NA NA NA NA +XIST NA NA NA NA NA NA +ZC3H12C 11 11q22.3 0 109964087 110042566 zinc finger CCCH-type containing 12C +ZDBF2 2 2q33.3 0 207139523 207179148 zinc finger, DBF-type containing 2 +ZFAT-AS1 NA NA NA NA NA NA +ZFP36L2 2 2p21 1 43449541 43453745 zinc finger protein 36, C3H type-like 2 +ZIC1 3 3q24 0 147127181 147134506 Zic family member 1 +ZIM2 19 19q13.43 1 57285915 57352097 zinc finger, imprinted 2 +ZIM3 19 19q13.43 1 57645464 57656570 zinc finger, imprinted 3 +ZNF127AS NA NA NA NA NA NA +ZNF225 19 19q13.31 0 44617548 44637255 zinc finger protein 225 +ZNF229 19 19q13.31 1 44930426 44952665 zinc finger protein 229 +ZNF264 19 19q13.43 0 57702868 57734214 zinc finger protein 264