add imprinted genes and imprinted genes information

diff --git a/Makefile b/Makefile
index b87aa21f22911187f642ab3af9f2eba75ce82c78..18dfbad2a43c5847e8354d30a42ead694b122e73 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -16,5 +16,8 @@ geneimprint_human.txt: geneimprint_human.html parse_geneimprint.pl
 parent_of_origin.txt: parent_of_origin.html parse_parent_of_origin.pl
        ./parse_parent_of_origin.pl $< > $@
 
-combined_imprinted_genes.txt: combine_imprinted_genes.R geneimprint_human.txt parent_of_origin.txt
+imprinted_genes.txt: combine_imprinted_genes.R geneimprint_human.txt parent_of_origin.txt
        $(R) $(ROPTS) -f $< --args $(wordlist 2,$(words $^),$^) $@
+
+imprinted_genes_information.txt: imprinted_genes.txt
+       ~/projects/chaim/bin/gene_info < $< > $@

diff --git a/README.md b/README.md
index dca29a8a4e1836da1b7e815df9f9ff828a722814..e473ad80c9ccda0e534d3a75137445086b215031 100644 (file)
--- a/README.md
+++ b/README.md
@@ -22,4 +22,7 @@ Catalog of Parent of Origin Effects Database
 Combined Data Files
 ===================
 
+imprinted_genes.txt -- contains a list of the imprinted genes
 
+imprinted_genes_information.txt -- contains the information for the
+list of the imprinted genes

diff --git a/imprinted_genes.txt b/imprinted_genes.txt
new file mode 100644 (file)
index 0000000..65c1491
--- /dev/null
+++ b/imprinted_genes.txt
@@ -0,0 +1,303 @@
+AIM1
+AMPD3
+ANO1
+APC
+APS
+ASB4
+ASCL2
+ATXN7
+AWT1
+BDNF
+BEGAIN
+BLCAP
+BRD2
+C19MC
+CALCR
+CASD1
+CD44
+CD81
+CDKN1C
+CNTNAP2
+COMMD1
+COPG2
+COPG2IT1
+CPA4
+CTNNA3
+DCN
+DDC
+DHCR7
+DIO3
+DIRAS3
+DLGAP2
+DLK1
+DLX5
+DNMT1
+DSCR3
+EPS15
+FLJ13639
+GAB1
+GABRB3
+GNAL
+GNAS1
+GNGT1
+GPR1
+GRB10
+H19
+H73492
+HFE
+HM13
+HTR2A
+HYMAI
+IDDM10
+IDDM8
+IGF2
+IGF2AS
+IGF2R
+IL4R
+IMPACT
+INPP5F
+INS
+ITUP1
+KCNK9
+KCNQ1
+KCNQ1DN
+KCNQ1OT1
+KLF14
+L211
+L3MBTL
+LGALS14
+LGALS8
+LIN28B
+LRRTM1
+MAGEL2
+MAGI2
+MAS1
+MEG3
+MEG8
+MEST
+MESTIT1
+MIR483
+MKRN3
+MS4A2
+MYCN
+NAA60
+NAP1L5
+NDN
+NDUFAF4
+NLRP2
+NNAT
+NPAP1
+NTM
+OSBPL1A
+OSBPL5
+PAPPA2
+PDGFC
+PEG10
+PEG3
+PHACTR2
+PHF11
+PHLDA2
+PLAGL1
+PON1
+PON2
+PON3
+PPP1R9A
+PRIM2
+PWRN1
+PWRN2
+RASGRF1
+RASSF1
+RB1
+RHOBTB3
+RTL1
+SBK1
+SCA8
+SDHD
+SFMBT2
+SFRP2
+SGCE
+SLC22A18AS
+SLC22A2
+SLC22A3
+SLC38A4
+SMPD1
+SNURF
+SPINK5
+SPTLC3
+STOX1
+TCEB3C
+TCOF1
+TFPI2
+TGFB3
+TH
+TP73
+TRPM5
+TSPAN32
+TSPEAR
+TSSC4
+U2AF1L1
+UBE3A
+UPD
+USP29
+W89101
+WIF1
+ZFAT
+ZNF215
+ZNF331
+ZNF597
+ABCC9
+ABCG8
+ACD
+ADAMTS16
+ALDH1L1
+APBA1
+ATP10A
+B4GALNT4
+BMP8B
+BRP44L
+BRUNOL4
+BTNL2
+C10orf91
+C10orf93
+C16orf57
+C20orf20
+C20orf82
+C6orf117
+C9orf116
+C9orf85
+CCDC85A
+CDH18
+CDK4
+CHMP2A
+CHST8
+COL9A3
+CSF2
+CYP1B1
+DGCR6
+DGCR6L
+DVL1
+E2F7
+EGFL7
+EVX1
+FAM50B
+FAM59A
+FAM70B
+FASTK
+FBRSL1
+FERMT2
+FGFRL1
+FLJ20464
+FLJ40296
+FLJ46321
+FOXF1
+FOXG1
+FUCA1
+GABRA5
+GABRG3
+GATA3
+GATM
+GDAP1L1
+GFI1
+GLI3
+GLIS3
+GNAS
+GNASAS
+GPT
+HES1
+HIST3H2BB
+HOXA11
+HOXA2
+HOXA3
+HOXA4
+HOXA5
+HOXB2
+HOXB3
+HOXC4
+HOXC9
+HSPA6
+IFITM1
+INPP5F V2
+IRAIN
+ISM1
+KBTBD3
+KIAA1530
+KIAA1545
+LDB1
+LILRB4
+LMX1B
+LOC100131170
+LY6D
+MCTS2
+MIMT1
+MIR184
+MIR296
+MIR298
+MIR371A
+MRAP2
+MYEOV2
+MZF1
+NAP1L4
+NDUFA4P1
+NKAIN3
+NKX6-2
+OBSCN
+OR11L1
+OTX1
+PAOX
+PEG13
+PEX10
+PHPT1
+PKP3
+PPAP2C
+PRDM16
+PSIMCT-1
+PTPN14
+PURG
+PWCR1
+PYY2
+RAB1B
+RBP5
+RNU5D-1
+RPL22
+SALL1
+SANG
+SGK2
+SIM2
+SLC22A18
+SLC22A2*
+SLC22A3*
+SLC26A10
+SLC4A2
+SNORD107
+SNORD108
+SNORD109A
+SNORD109B
+SNORD115-48
+SNORD115@
+SNORD116@
+SNORD64
+SNRPN
+SOX8
+SPON2
+TIGD1
+TMEM52
+TMEM60
+TMEM88
+TSHZ3
+TSIX
+VAX2
+VENTX
+WDR8
+WT1-Alt trans
+XIST
+ZC3H12C
+ZDBF2
+ZFAT-AS1
+ZFP36L2
+ZIC1
+ZIM2
+ZIM3
+ZNF127AS
+ZNF225
+ZNF229
+ZNF264

diff --git a/imprinted_genes_information.txt b/imprinted_genes_information.txt
new file mode 100644 (file)
index 0000000..505a982
--- /dev/null
+++ b/imprinted_genes_information.txt
@@ -0,0 +1,304 @@
+gene   chr     ideogram        complement      start   stop    name
+AIM1   6       6q21    0       106959730       107018335       absent in melanoma 1
+AMPD3  11      11p15.4 0       10471868        10529126        adenosine monophosphate deaminase 3
+ANO1   11      11q13.3 0       69924408        70035651        anoctamin 1, calcium activated chloride channel
+APC    5       5q22.2  0       112043202       112181936       adenomatous polyposis coli
+APS    NA      NA      NA      NA      NA      NA
+ASB4   7       7q21.3  0       95115213        95169543        ankyrin repeat and SOCS box containing 4
+ASCL2  11      11p15.5 1       2289728 2292182 achaete-scute complex homolog 2 (Drosophila)
+ATXN7  3       3p14.1  0       63850233        63989138        ataxin 7
+AWT1   NA      NA      NA      NA      NA      NA
+BDNF   11      11p14.1 1       27676440        27743605        brain-derived neurotrophic factor
+BEGAIN 14      14q32.2 1       101003484       101036131       brain-enriched guanylate kinase-associated homolog (rat)
+BLCAP  20      20q11.23        1       36145819        36156333        bladder cancer associated protein
+BRD2   6       6p21.32 0       32936437        32949282        bromodomain containing 2
+C19MC  NA      NA      NA      NA      NA      NA
+CALCR  7       7q21.3  1       93053799        93204042        calcitonin receptor
+CASD1  7       7q21.3  0       94139170        94186331        CAS1 domain containing 1
+CD44   11      11p13   0       35160417        35253949        CD44 molecule (Indian blood group)
+CD81   11      11p15.5 0       2398547 2418649 CD81 molecule
+CDKN1C 11      11p15.4 1       2904448 2906995 cyclin-dependent kinase inhibitor 1C (p57, Kip2)
+CNTNAP2        7       7q35    0       145813453       148118090       contactin associated protein-like 2
+COMMD1 2       2p15    0       62132803        62363205        copper metabolism (Murr1) domain containing 1
+COPG2  7       7q32.2  1       130146079       130353598       coatomer protein complex, subunit gamma 2
+COPG2IT1       NA      NA      NA      NA      NA      NA
+CPA4   7       7q32.2  0       129932974       129964020       carboxypeptidase A4
+CTNNA3 10      10q21.3 1       67679725        69455949        catenin (cadherin-associated protein), alpha 3
+DCN    12      12q21.33        1       91539035        91576806        decorin
+DDC    7       7p12.1  1       50526134        50633154        dopa decarboxylase (aromatic L-amino acid decarboxylase)
+DHCR7  11      11q13.4 1       71145457        71159477        7-dehydrocholesterol reductase
+DIO3   14      14q32.31        0       102027688       102029789       deiodinase, iodothyronine, type III
+DIRAS3 1       1p31.3  1       68511645        68516460        DIRAS family, GTP-binding RAS-like 3
+DLGAP2 8       8p23.3  0       1449569 1656642 discs, large (Drosophila) homolog-associated protein 2
+DLK1   14      14q32.2 0       101193202       101201467       delta-like 1 homolog (Drosophila)
+DLX5   7       7q21.3  1       96649702        96654143        distal-less homeobox 5
+DNMT1  19      19p13.2 1       10244022        10305755        DNA (cytosine-5-)-methyltransferase 1
+DSCR3  21      21q22.13        1       38595726        38639833        Down syndrome critical region gene 3
+EPS15  1       1p32.3  1       51819935        51984995        epidermal growth factor receptor pathway substrate 15
+FLJ13639       NA      NA      NA      NA      NA      NA
+GAB1   4       4q31.21 0       144257983       144395718       GRB2-associated binding protein 1
+GABRB3 15      15q12   1       26788693        27018935        gamma-aminobutyric acid (GABA) A receptor, beta 3
+GNAL   18      18p11.21        0       11689136        11883144        guanine nucleotide binding protein (G protein), alpha activating activity polypeptide, olfactory type
+GNAS1  NA      NA      NA      NA      NA      NA
+GNGT1  7       7q21.3  0       93535820        93540485        guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
+GPR1   2       2q33.3  1       207040040       207082771       G protein-coupled receptor 1
+GRB10  7       7p12.1  1       50657760        50861159        growth factor receptor-bound protein 10
+H19    NA      NA      NA      NA      NA      NA
+H73492 NA      NA      NA      NA      NA      NA
+HFE    6       6p22.2  0       26087509        26095469        hemochromatosis
+HM13   20      20q11.21        0       30102241        30157370        histocompatibility (minor) 13
+HTR2A  13      13q14.2 1       47407513        47471169        5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
+HYMAI  NA      NA      NA      NA      NA      NA
+IDDM10 NA      NA      NA      NA      NA      NA
+IDDM8  NA      NA      NA      NA      NA      NA
+IGF2   11      11p15.5 1       2150347 2170833 insulin-like growth factor 2 (somatomedin A)
+IGF2AS NA      NA      NA      NA      NA      NA
+IGF2R  6       6q25.3  0       160390131       160527583       insulin-like growth factor 2 receptor
+IL4R   16      16p12.1 0       27325251        27376099        interleukin 4 receptor
+IMPACT 18      18q11.2 0       22006609        22033495        Impact homolog (mouse)
+INPP5F 10      10q26.11        0       121485609       121588659       inositol polyphosphate-5-phosphatase F
+INS    11      11p15.5 1       2181009 2182439 insulin
+ITUP1  NA      NA      NA      NA      NA      NA
+KCNK9  8       8q24.3  1       140624804       140715299       potassium channel, subfamily K, member 9
+KCNQ1  11      11p15.5 0       2466221 2870340 potassium voltage-gated channel, KQT-like subfamily, member 1
+KCNQ1DN        NA      NA      NA      NA      NA      NA
+KCNQ1OT1       NA      NA      NA      NA      NA      NA
+KLF14  7       7q32.3  1       130417396       130418888       Kruppel-like factor 14
+L211   NA      NA      NA      NA      NA      NA
+L3MBTL NA      NA      NA      NA      NA      NA
+LGALS14        19      19q13.2 0       40194946        40200088        lectin, galactoside-binding, soluble, 14
+LGALS8 1       1q43    0       236681514       236716281       lectin, galactoside-binding, soluble, 8
+LIN28B 6       6q16.3  0       105404923       105531206       lin-28 homolog B (C. elegans)
+LRRTM1 2       2p12    1       80529003        80531487        leucine rich repeat transmembrane neuronal 1
+MAGEL2 15      15q11.2 1       23888696        23892993        MAGE-like 2
+MAGI2  7       7q21.11 1       77646374        79082890        membrane associated guanylate kinase, WW and PDZ domain containing 2
+MAS1   6       6q25.3  0       160327974       160329108       MAS1 oncogene
+MEG3   NA      NA      NA      NA      NA      NA
+MEG8   NA      NA      NA      NA      NA      NA
+MEST   7       7q32.2  0       130126046       130146133       mesoderm specific transcript homolog (mouse)
+MESTIT1        NA      NA      NA      NA      NA      NA
+MIR483 NA      NA      NA      NA      NA      NA
+MKRN3  15      15q11.2 0       23810454        23813167        makorin ring finger protein 3
+MS4A2  11      11q12.1 0       59856137        59865940        membrane-spanning 4-domains, subfamily A, member 2
+MYCN   2       2p24.3  0       16080683        16087129        v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
+NAA60  NA      NA      NA      NA      NA      NA
+NAP1L5 4       4q22.1  1       89617066        89619023        nucleosome assembly protein 1-like 5
+NDN    15      15q11.2 1       23930554        23932450        necdin homolog (mouse)
+NDUFAF4        6       6q16.1  1       97337187        97345767        NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4
+NLRP2  19      19q13.42        0       55476652        55512510        NLR family, pyrin domain containing 2
+NNAT   20      20q11.23        0       36149607        36152092        neuronatin
+NPAP1  NA      NA      NA      NA      NA      NA
+NTM    11      11q25   0       131240371       132206716       neurotrimin
+OSBPL1A        18      18q11.2 1       21742009        21977833        oxysterol binding protein-like 1A
+OSBPL5 11      11p15.4 1       3108346 3186582 oxysterol binding protein-like 5
+PAPPA2 1       1q25.2  0       176432307       176811972       pappalysin 2
+PDGFC  4       4q32.1  1       157682763       157892546       platelet derived growth factor C
+PEG10  7       7q21.3  0       94285637        94299007        paternally expressed 10
+PEG3   19      19q13.43        1       57321445        57352094        paternally expressed 3
+PHACTR2        6       6q24.2  0       143929317       144152322       phosphatase and actin regulator 2
+PHF11  13      13q14.2 0       50069801        50103117        PHD finger protein 11
+PHLDA2 11      11p15.4 1       2949503 2950650 pleckstrin homology-like domain, family A, member 2
+PLAGL1 6       6q24.2  1       144261437       144385735       pleiomorphic adenoma gene-like 1
+PON1   7       7q21.3  1       94927669        94953884        paraoxonase 1
+PON2   7       7q21.3  1       95034174        95064384        paraoxonase 2
+PON3   7       7q21.3  1       94989184        95025687        paraoxonase 3
+PPP1R9A        7       7q21.3  0       94536949        94925727        protein phosphatase 1, regulatory subunit 9A
+PRIM2  6       6p11.2  0       57182415        57512702        primase, DNA, polypeptide 2 (58kDa)
+PWRN1  NA      NA      NA      NA      NA      NA
+PWRN2  NA      NA      NA      NA      NA      NA
+RASGRF1        15      15q25.1 1       79252289        79383215        Ras protein-specific guanine nucleotide-releasing factor 1
+RASSF1 3       3p21.31 1       50367217        50378367        Ras association (RalGDS/AF-6) domain family member 1
+RB1    13      13q14.2 0       48877883        49056026        retinoblastoma 1
+RHOBTB3        5       5q15    0       95066850        95132071        Rho-related BTB domain containing 3
+RTL1   14      14q32.2 1       101346992       101351184       retrotransposon-like 1
+SBK1   16      16p11.2 0       28303840        28335170        SH3-binding domain kinase 1
+SCA8   NA      NA      NA      NA      NA      NA
+SDHD   11      11q23.1 0       111957571       111966518       succinate dehydrogenase complex, subunit D, integral membrane protein
+SFMBT2 10      10p14   1       7200586 7453448 Scm-like with four mbt domains 2
+SFRP2  4       4q31.3  1       154701742       154710228       secreted frizzled-related protein 2
+SGCE   7       7q21.3  1       94214536        94285521        sarcoglycan, epsilon
+SLC22A18AS     11      11p15.4 1       2909327 2925175 solute carrier family 22 (organic cation transporter), member 18 antisense
+SLC22A2        6       6q25.3  1       160637794       160679963       solute carrier family 22 (organic cation transporter), member 2
+SLC22A3        6       6q25.3  0       160769425       160876014       solute carrier family 22 (extraneuronal monoamine transporter), member 3
+SLC38A4        12      12q13.11        1       47158544        47219780        solute carrier family 38, member 4
+SMPD1  11      11p15.4 0       6411644 6416228 sphingomyelin phosphodiesterase 1, acid lysosomal
+SNURF  15      15q11.2 0       25200070        25223729        SNRPN upstream reading frame
+SPINK5 5       5q32    0       147443535       147516925       serine peptidase inhibitor, Kazal type 5
+SPTLC3 20      20p12.1 0       12989627        13147411        serine palmitoyltransferase, long chain base subunit 3
+STOX1  10      10q21.3 0       70587294        70655209        storkhead box 1
+TCEB3C 18      18q21.1 1       44554573        44556449        transcription elongation factor B polypeptide 3C (elongin A3)
+TCOF1  5       5q32    0       149737202       149779871       Treacher Collins-Franceschetti syndrome 1
+TFPI2  7       7q21.3  1       93515745        93520065        tissue factor pathway inhibitor 2
+TGFB3  14      14q24.3 1       76424442        76448092        transforming growth factor, beta 3
+TH     11      11p15.5 1       2185159 2193035 tyrosine hydroxylase
+TP73   1       1p36.32 0       3569129 3652765 tumor protein p73
+TRPM5  11      11p15.5 1       2425745 2444275 transient receptor potential cation channel, subfamily M, member 5
+TSPAN32        11      11p15.5 0       2323243 2339430 tetraspanin 32
+TSPEAR 21      21q22.3 1       45917775        46131495        thrombospondin-type laminin G domain and EAR repeats
+TSSC4  11      11p15.5 0       2423523 2425106 tumor suppressing subtransferable candidate 4
+U2AF1L1        NA      NA      NA      NA      NA      NA
+UBE3A  15      15q11.2 1       25582396        25684175        ubiquitin protein ligase E3A
+UPD    NA      NA      NA      NA      NA      NA
+USP29  19      19q13.43        0       57631509        57643294        ubiquitin specific peptidase 29
+W89101 NA      NA      NA      NA      NA      NA
+WIF1   12      12q14.3 1       65444404        65515346        WNT inhibitory factor 1
+ZFAT   8       8q24.22 1       135490031       135725292       zinc finger and AT hook domain containing
+ZNF215 11      11p15.4 0       6947654 6979278 zinc finger protein 215
+ZNF331 19      19q13.42        0       54024177        54083523        zinc finger protein 331
+ZNF597 16      16p13.3 1       3486110 3493490 zinc finger protein 597
+ABCC9  12      12p12.1 1       21950323        22089628        ATP-binding cassette, sub-family C (CFTR/MRP), member 9
+ABCG8  2       2p21    0       44066103        44105605        ATP-binding cassette, sub-family G (WHITE), member 8
+ACD    16      16q22.1 1       67691415        67694718        adrenocortical dysplasia homolog (mouse)
+ADAMTS16       5       5p15.32 0       5140443 5320412 ADAM metallopeptidase with thrombospondin type 1 motif, 16
+ALDH1L1        3       3q21.3  1       125822408       125899485       aldehyde dehydrogenase 1 family, member L1
+APBA1  9       9q21.11 1       72042449        72287275        amyloid beta (A4) precursor protein-binding, family A, member 1
+ATP10A 15      15q12   1       25923859        26108349        ATPase, class V, type 10A
+B4GALNT4       11      11p15.5 0       369795  382117  beta-1,4-N-acetyl-galactosaminyl transferase 4
+BMP8B  1       1p34.2  1       40223903        40254533        bone morphogenetic protein 8b
+BRP44L 6       6q27    1       166778407       166796486       brain protein 44-like
+BRUNOL4        NA      NA      NA      NA      NA      NA
+BTNL2  6       6p21.32 1       32362513        32374900        butyrophilin-like 2 (MHC class II associated)
+C10orf91       10      10q26.3 0       134258714       134261825       chromosome 10 open reading frame 91
+C10orf93       10      10q26.3 1       134742689       134756089       NA
+C16orf57       16      16q21   0       58035277        58055527        chromosome 16 open reading frame 57
+C20orf20       20      20q13.33        0       61427805        61431945        chromosome 20 open reading frame 20
+C20orf82       NA      NA      NA      NA      NA      NA
+C6orf117       NA      NA      NA      NA      NA      NA
+C9orf116       9       9q34.3  1       138387026       138391761       chromosome 9 open reading frame 116
+C9orf85        9       9q21.13 0       74526423        74588373        chromosome 9 open reading frame 85
+CCDC85A        2       2p16.1  0       56411258        56613309        coiled-coil domain containing 85A
+CDH18  5       5p14.3  1       19473140        19988353        cadherin 18, type 2
+CDK4   12      12q14.1 1       58142003        58146164        cyclin-dependent kinase 4
+CHMP2A 19      19q13.43        1       59062933        59066486        charged multivesicular body protein 2A
+CHST8  19      19q13.11        0       34112861        34264414        carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8
+COL9A3 20      20q13.33        0       61448414        61472511        collagen, type IX, alpha 3
+CSF2   5       5q31.1  0       131409485       131411859       colony stimulating factor 2 (granulocyte-macrophage)
+CYP1B1 2       2p22.2  1       38294746        38303323        cytochrome P450, family 1, subfamily B, polypeptide 1
+DGCR6  22      22q11.21        0       18893736        18899601        DiGeorge syndrome critical region gene 6
+DGCR6L 22      22q11.21        1       20301761        20307628        DiGeorge syndrome critical region gene 6-like
+DVL1   1       1p36.33 1       1270658 1284492 dishevelled, dsh homolog 1 (Drosophila)
+E2F7   12      12q21.2 1       77415026        77459360        E2F transcription factor 7
+EGFL7  9       9q34.3  0       139557377       139567130       EGF-like-domain, multiple 7
+EVX1   7       7p15.2  0       27282164        27286192        even-skipped homeobox 1
+FAM50B 6       6p25.2  0       3849632 3851551 family with sequence similarity 50, member B
+FAM59A 18      18q12.1 1       29843484        30050447        family with sequence similarity 59, member A
+FAM70B 13      13q34   0       114462216       114514899       family with sequence similarity 70, member B
+FASTK  7       7q36.1  1       150773708       150777951       Fas-activated serine/threonine kinase
+FBRSL1 12      12q24.33        0       133067157       133161774       fibrosin-like 1
+FERMT2 14      14q22.1 1       53323989        53417815        fermitin family member 2
+FGFRL1 4       4p16.3  0       1005610 1020686 fibroblast growth factor receptor-like 1
+FLJ20464       NA      NA      NA      NA      NA      NA
+FLJ40296       NA      NA      NA      NA      NA      NA
+FLJ46321       NA      NA      NA      NA      NA      NA
+FOXF1  16      16q24.1 0       86544133        86548070        forkhead box F1
+FOXG1  14      14q12   0       29236287        29238871        forkhead box G1
+FUCA1  1       1p36.11 1       24171567        24194859        fucosidase, alpha-L- 1, tissue
+GABRA5 15      15q12   0       27111866        27194357        gamma-aminobutyric acid (GABA) A receptor, alpha 5
+GABRG3 15      15q12   0       27216429        27778373        gamma-aminobutyric acid (GABA) A receptor, gamma 3
+GATA3  10      10p14   0       8096667 8117164 GATA binding protein 3
+GATM   15      15q21.1 1       45653322        45670980        glycine amidinotransferase (L-arginine:glycine amidinotransferase)
+GDAP1L1        20      20q13.12        0       42875908        42909013        ganglioside induced differentiation associated protein 1-like 1
+GFI1   1       1p22.1  1       92940318        92952433        growth factor independent 1 transcription repressor
+GLI3   7       7p14.1  1       42000547        42276618        GLI family zinc finger 3
+GLIS3  9       9p24.2  1       3824128 4300035 GLIS family zinc finger 3
+GNAS   20      20q13.32        0       57414795        57486250        GNAS complex locus
+GNASAS NA      NA      NA      NA      NA      NA
+GPT    8       8q24.3  0       145729465       145732555       glutamic-pyruvate transaminase (alanine aminotransferase)
+HES1   3       3q29    0       193853931       193856401       hairy and enhancer of split 1, (Drosophila)
+HIST3H2BB      1       1q42.13 0       228645808       228646259       histone cluster 3, H2bb
+HOXA11 7       7p15.2  1       27220776        27224835        homeobox A11
+HOXA2  7       7p15.2  1       27139973        27142394        homeobox A2
+HOXA3  7       7p15.2  1       27145809        27166639        homeobox A3
+HOXA4  7       7p15.2  1       27168126        27170399        homeobox A4
+HOXA5  7       7p15.2  1       27180671        27183287        homeobox A5
+HOXB2  17      17q21.32        1       46620017        46622393        homeobox B2
+HOXB3  17      17q21.32        1       46626232        46651810        homeobox B3
+HOXC4  12      12q13.13        0       54410642        54449814        homeobox C4
+HOXC9  12      12q13.13        0       54393877        54397121        homeobox C9
+HSPA6  1       1q23.3  0       161494036       161496687       heat shock 70kDa protein 6 (HSP70B')
+IFITM1 11      11p15.5 0       313991  315272  interferon induced transmembrane protein 1
+INPP5F V2      NA      NA      NA      NA      NA      NA
+IRAIN  NA      NA      NA      NA      NA      NA
+ISM1   20      20p12.1 0       13202418        13281297        isthmin 1 homolog (zebrafish)
+KBTBD3 11      11q22.3 1       105921825       105948465       kelch repeat and BTB (POZ) domain containing 3
+KIAA1530       4       4p16.3  0       1341104 1381837 KIAA1530
+KIAA1545       NA      NA      NA      NA      NA      NA
+LDB1   10      10q24.32        1       103867317       103880210       LIM domain binding 1
+LILRB4 19      19q13.42        0       55174124        55179848        leukocyte immunoglobulin-like receptor, subfamily B (with TM and ITIM domains), member 4
+LMX1B  9       9q33.3  0       129376722       129463311       LIM homeobox transcription factor 1, beta
+LOC100131170   NA      NA      NA      NA      NA      NA
+LY6D   8       8q24.3  1       143866298       143868008       lymphocyte antigen 6 complex, locus D
+MCTS2  NA      NA      NA      NA      NA      NA
+MIMT1  NA      NA      NA      NA      NA      NA
+MIR184 NA      NA      NA      NA      NA      NA
+MIR296 NA      NA      NA      NA      NA      NA
+MIR298 NA      NA      NA      NA      NA      NA
+MIR371A        NA      NA      NA      NA      NA      NA
+MRAP2  6       6q14.2  0       84743420        84800606        melanocortin 2 receptor accessory protein 2
+MYEOV2 2       2q37.3  1       241065980       241075764       myeloma overexpressed 2
+MZF1   19      19q13.43        1       59073284        59084942        myeloid zinc finger 1
+NAP1L4 11      11p15.4 1       2965660 3013607 nucleosome assembly protein 1-like 4
+NDUFA4P1       NA      NA      NA      NA      NA      NA
+NKAIN3 8       8q12.3  0       63161501        63903628        Na+/K+ transporting ATPase interacting 3
+NKX6-2 10      10q26.3 1       134598320       134599537       NK6 homeobox 2
+OBSCN  1       1q42.13 0       228395861       228566575       obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF
+OR11L1 1       1q44    1       248004230       248005198       olfactory receptor, family 11, subfamily L, member 1
+OTX1   2       2p15    0       63277192        63284966        orthodenticle homeobox 1
+PAOX   10      10q26.3 0       135192741       135205198       polyamine oxidase (exo-N4-amino)
+PEG13  NA      NA      NA      NA      NA      NA
+PEX10  1       1p36.32 1       2336241 2344010 peroxisomal biogenesis factor 10
+PHPT1  9       9q34.3  0       139743256       139745490       phosphohistidine phosphatase 1
+PKP3   11      11p15.5 0       394217  404908  plakophilin 3
+PPAP2C 19      19p13.3 1       281043  291435  phosphatidic acid phosphatase type 2C
+PRDM16 1       1p36.32 0       2985742 3355185 PR domain containing 16
+PSIMCT-1       NA      NA      NA      NA      NA      NA
+PTPN14 1       1q41    1       214522039       214725024       protein tyrosine phosphatase, non-receptor type 14
+PURG   8       8p12    1       30853321        30891231        purine-rich element binding protein G
+PWCR1  NA      NA      NA      NA      NA      NA
+PYY2   NA      NA      NA      NA      NA      NA
+RAB1B  11      11q13.2 0       66036056        66044963        RAB1B, member RAS oncogene family
+RBP5   12      12p13.31        1       7276280 7281466 retinol binding protein 5, cellular
+RNU5D-1        NA      NA      NA      NA      NA      NA
+RPL22  1       1p36.31 1       6245080 6259679 ribosomal protein L22
+SALL1  16      16q12.1 1       51169886        51185183        sal-like 1 (Drosophila)
+SANG   NA      NA      NA      NA      NA      NA
+SGK2   20      20q13.12        0       42187635        42214273        serum/glucocorticoid regulated kinase 2
+SIM2   21      21q22.13        0       38071991        38122510        single-minded homolog 2 (Drosophila)
+SLC22A18       11      11p15.4 0       2920951 2946476 solute carrier family 22, member 18
+SLC22A2*       NA      NA      NA      NA      NA      NA
+SLC22A3*       NA      NA      NA      NA      NA      NA
+SLC26A10       12      12q13.3 0       58013693        58019934        solute carrier family 26, member 10
+SLC4A2 7       7q36.1  0       150755299       150773614       solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1)
+SNORD107       NA      NA      NA      NA      NA      NA
+SNORD108       NA      NA      NA      NA      NA      NA
+SNORD109A      NA      NA      NA      NA      NA      NA
+SNORD109B      NA      NA      NA      NA      NA      NA
+SNORD115-48    NA      NA      NA      NA      NA      NA
+SNORD115@      NA      NA      NA      NA      NA      NA
+SNORD116@      NA      NA      NA      NA      NA      NA
+SNORD64        NA      NA      NA      NA      NA      NA
+SNRPN  15      15q11.2 0       25068794        25223729        small nuclear ribonucleoprotein polypeptide N
+SOX8   16      16p13.3 0       1031808 1036979 SRY (sex determining region Y)-box 8
+SPON2  4       4p16.3  1       1160720 1202750 spondin 2, extracellular matrix protein
+TIGD1  2       2q37.1  1       233412779       233415226       tigger transposable element derived 1
+TMEM52 1       1p36.33 1       1849029 1850740 transmembrane protein 52
+TMEM60 7       7q11.23 1       77423045        77427747        transmembrane protein 60
+TMEM88 17      17p13.1 0       7758384 7759417 transmembrane protein 88
+TSHZ3  19      19q12   1       31765851        31840190        teashirt zinc finger homeobox 3
+TSIX   NA      NA      NA      NA      NA      NA
+VAX2   2       2p13.3  0       71127720        71160576        ventral anterior homeobox 2
+VENTX  10      10q26.3 0       135051408       135055433       VENT homeobox
+WDR8   NA      NA      NA      NA      NA      NA
+WT1-Alt trans  NA      NA      NA      NA      NA      NA
+XIST   NA      NA      NA      NA      NA      NA
+ZC3H12C        11      11q22.3 0       109964087       110042566       zinc finger CCCH-type containing 12C
+ZDBF2  2       2q33.3  0       207139523       207179148       zinc finger, DBF-type containing 2
+ZFAT-AS1       NA      NA      NA      NA      NA      NA
+ZFP36L2        2       2p21    1       43449541        43453745        zinc finger protein 36, C3H type-like 2
+ZIC1   3       3q24    0       147127181       147134506       Zic family member 1
+ZIM2   19      19q13.43        1       57285915        57352097        zinc finger, imprinted 2
+ZIM3   19      19q13.43        1       57645464        57656570        zinc finger, imprinted 3
+ZNF127AS       NA      NA      NA      NA      NA      NA
+ZNF225 19      19q13.31        0       44617548        44637255        zinc finger protein 225
+ZNF229 19      19q13.31        1       44930426        44952665        zinc finger protein 229
+ZNF264 19      19q13.43        0       57702868        57734214        zinc finger protein 264