add code to calculate the imprinted genes of mouse

[imprinted_genes.git] / Makefile

diff --git a/Makefile b/Makefile
index 193e28d99615c78204bc5b738b0c0eb72538da7d..2bac96e06e31b2aacf4e2dfa10bf0938665c1414 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -8,19 +8,33 @@ all: imprinted_genes_information.txt
 geneimprint_human.html:
        wget -O $@ "http://www.geneimprint.com/site/genes-by-species.Homo+sapiens"
 
+geneimprint_mouse.html:
+       wget -O $@ "http://www.geneimprint.com/site/genes-by-species.Mus+musculus"
+
 
 parent_of_origin.html:
        wget -O $@ "http://igc.otago.ac.nz/FMPro?-DB=Catalogue.fm&-error=Error.html&-Format=Record3.html&Genetype=maingene&-SortField=Species&custom=Species&-SortField=Chr&custom=Chromosome&-SortField=Location&-SortOrder=Ascending&-Max=all&-Find"
 
+
 geneimprint_human.txt: geneimprint_human.html parse_geneimprint.pl
        ./parse_geneimprint.pl $< > $@
 
+geneimprint_mouse.txt: geneimprint_mouse.html parse_geneimprint.pl
+       ./parse_geneimprint.pl $< > $@
+
 parent_of_origin.txt: parent_of_origin.html parse_parent_of_origin.pl
        ./parse_parent_of_origin.pl $< > $@
 
+parent_of_origin_mouse.txt: parent_of_origin.html parse_parent_of_origin.pl
+       ./parse_parent_of_origin.pl --taxon Mouse $< > $@
+
 imprinted_genes.txt: combine_imprinted_genes.R geneimprint_human.txt \
        parent_of_origin.txt gene_aliases.txt
        $(R) $(ROPTS) -f $< --args $(wordlist 2,$(words $^),$^) $@
 
 imprinted_genes_information.txt: imprinted_genes.txt
        ~/projects/chaim/bin/gene_info < $< > $@
+
+imprinted_genes_mouse.txt: combine_imprinted_genes.R geneimprint_mouse.txt \
+       parent_of_origin_mouse.txt gene_aliases_mouse.txt
+       $(R) $(ROPTS) -f $< --args $(wordlist 2,$(words $^),$^) $@