X-Git-Url: https://git.donarmstrong.com/?p=function2gene.git;a=blobdiff_plain;f=bin%2Fget_ncbi_results;fp=bin%2Fget_ncbi_results;h=3e1a6259ce1d2e717727ad7a9ed4a1d1a3bef118;hp=7a869014bc15525ab80f36c0fc02ad50ac94f4eb;hb=0486e6434cd182e8b30ba008d98ad3d3f008d2ab;hpb=3557eb364c40602a2f2d3f4c2a68edd6ee00b632

diff --git a/bin/get_ncbi_results b/bin/get_ncbi_results
index 7a86901..3e1a625 100755
--- a/bin/get_ncbi_results
+++ b/bin/get_ncbi_results
@@ -143,6 +143,7 @@ while (<$terms>) {
 
      # Get XML file
      my @current_ids;
+     print {$xml_file} "<opt>\n";
      while (@current_ids = splice(@gene_ids,0,5)) {
 	  $uri = URI->new($options{pubmed_site}.$options{pubmed_get_url});
 	  $uri->query_form($uri->query_form(),
@@ -167,10 +168,10 @@ while (<$terms>) {
 	  $response =~ s/^\s*<pre>//gso;
 	  $response =~ s#</pre>\s*$##gso;
 
-
 	  print {$xml_file} $response;
 	  sleep 10;
      }
+     print {$xml_file} "</opt>\n";
      undef $xml_file;
 }