X-Git-Url: https://git.donarmstrong.com/?p=function2gene.git;a=blobdiff_plain;f=README;fp=README;h=d58ea51cfd8a19153568bdb7e54403200b036e5b;hp=0000000000000000000000000000000000000000;hb=8f300b08c98e264e6ffd14e4fcc3f6bacf1082fe;hpb=5c187e3d7715f1179308c3c40277485ec5ebefb7 diff --git a/README b/README new file mode 100644 index 0000000..d58ea51 --- /dev/null +++ b/README @@ -0,0 +1,32 @@ +INSTALLATION + +Function2Gene currently requires the following: + +perl +wget +HTML::TreeBuilder +HTML::ElementTable +XML::Parser::Expat +Thread::Queue + +these requirements are most easily satisfied on a Debian system (or +other unix systems) but it is possible to use windows as well. + +aptitude install wget perl libwww-perl libxml-parser-perl dh-make-perl; +dh-make-perl --cpan --build --install Thread::Queue; + +will retrieve the necessary commponents. [On lenny or unstable, you +will want libhtml-parser-perl instead of libwww-perl.] + +For other systems, installing the modules using CPAN may be the best +approach. + +USAGE + +All of the programs are located within a bin directory. For a +demonstration, you can simply do the following: + +cd bin; +echo 'transferrin' > keywords.txt +function2gene --keywords keywords.txt --results keyword_results; +