=item B<--restart-at>
If you need to restart the process at a particular state (which has
-already been completed) specify this option.
+already been completed) specify this option. Valid values are get,
+parse, or combine.
=item B<--debug, -d>
echo 'transferrin' > keywords.txt
function2gene --keywords keywords.txt --results keyword_results
+ # reparse the results
+ function2gene --keywords keywords.txt --results keyword_results \
+ --restart-at parse
+
=cut
$state{done_keywords}{combined}{$db}{$keyword} = 1;
}
save_state(\%state);
- ADVISE("Finished; results in $options{results}/combined_results");
+ write_command_to_file('combined_results_table.txt',
+ "$base_dir/results_to_table",
+ 'combined_results.txt',
+ );
+ ADVISE("Finished; results in $options{results}/combined_results.txt");
}
else {
ADVISE('Nothing to do. [Perhaps you wanted --restart-at?]');