* Finish addition of ensembl support

[function2gene.git] / bin / combine_results

diff --git a/bin/combine_results b/bin/combine_results
index 666fe7c81a70808c6bf01b69ed4952f0d6a5a156..a365620a6a99f923bf946d0e7060014f6a1600ed 100755 (executable)
--- a/bin/combine_results
+++ b/bin/combine_results
@@ -297,18 +297,48 @@ sub add_if_better{
      }
 }
 
+sub space_fill{
+     my ($value,$length,$right) = @_;
+     $right ||= 0;
+     if (length($value) > $length) {
+         $value =~ m/(.{$length})/;
+         return $1;
+     }
+     if (length($value) == $length) {
+         return $value
+     }
+     if ($right) {
+         return join('',
+                     ' ' x ($length - length($value)),
+                     $value,
+                    );
+     }
+     else {
+         return join('',
+                     $value,
+                     ' ' x ($length - length($value)),
+                    );
+     }
+}
+
+sub results_table_line {
+     my ($keyword,@fields) = @_;
+     return join( ' & ',
+                 space_fill($keyword,23),
+                 map {space_fill($_,11,1)} @fields
+               )."\n";
+}
 
+my @database_order = grep {lc($_) ne 'total'} keys %databases;
 if (defined $results_table_fh) {
-     our ($keyword,$weight,$autoweight,$gct,$hvt,$nct,$t) = ('Keyword','Weight','Autoweight','GeneCards','Harvester','NCBI','Total');
-     format RESULTS_TABLE =
-@<<<<<<<<<<<<<<<<<<<<<< & @>>>>>>>>>> & @>>>>>>>>>> & @>>>>>>>>>> & @>>>>>>>>>> & @>>>>>>>>>> & @>>>>>>>>>> \\
-$keyword,                 $weight,      $autoweight,  $gct,         $hvt,         $nct,         $t
-.
-     $results_table_fh->format_name('RESULTS_TABLE');
-     write $results_table_fh;
+     my $keyword;
+     print {$results_table_fh} results_table_line('Keyword','Weight','Autoweight',
+                                                 map {ucfirst($_)} @database_order,
+                                                 'Total',
+                                                );
 
      for $keyword (sort keys %terms) {
-         ($gct,$hvt,$nct,$t) =
+         my @fields =
               map {
                    if (not defined $_) {
                         '$-$';
@@ -317,15 +347,17 @@ $keyword,                 $weight,      $autoweight,  $gct,         $hvt,
                         $_->{unique} ||= 0;
                         "$_->{count} ($_->{unique})";
                    }
-              } @{$terms{$keyword}}{qw(genecard harvester ncbi total)};
-         $weight = $keyword_weight{$keyword} || 1;
-         $autoweight = $auto_weight{$keyword};
-         write $results_table_fh;
+              } @{$terms{$keyword}}{@database_order,'total'};
+         unshift @fields, $auto_weight{$keyword};
+         unshift @fields, $keyword_weight{$keyword} || 1;
+         print {$results_table_fh} results_table_line($keyword,
+                                                      @fields
+                                                     );
 
      }
-
      $keyword = 'Total';
-     ($gct,$hvt,$nct,$t) =
+     my @fields = ('','');
+     push @fields,
          map {
               if (not defined $_) {
                    '$-$';
@@ -334,11 +366,10 @@ $keyword,                 $weight,      $autoweight,  $gct,         $hvt,
                    $_->{unique} ||= 0;
                    "$_->{count} ($_->{unique})";
               }
-         } map {$_->{total}} @databases{qw(genecard harvester ncbi total)};
-     #($gct,$hvt,$nct,$t) = map {$_->{total}} @databases{qw(genecard harvester ncbi total)};
-     $weight = '';
-     $autoweight = '';
-     write $results_table_fh;
+         } map {$_->{total}} @databases{@database_order,'total'};
+     print {$results_table_fh} results_table_line($keyword,
+                                                 @fields
+                                                );
 }
 
 __END__