.TH FASTQ-UNIQ 1

.SH NAME
fastq-uniq - print sequences matching a pattern

.SH SYNOPSIS
.B fastq-uniq [OPTION]... PATTERN [FILE]...

.SH DESCRIPTION
Print a non-redundant list of occurring sequences, removing all duplicate
sequences. Output is in FASTA format (as quality strings are ignored), with
sequence identifiers formatted as,

>uniq-read-N (M copies)

Where, N in a unique number assigned to the sequence and M is the number of
copies occurring.

One ore more FILEs may be specified, otherwise input is read from standard input.
Input files may be gziped.

.SH OPTIONS
.TP
\fB\-v\fR, \fB\-\-verbose\fR
Print status updates along the way.
.TP
\fB\-h\fR, \fB\-\-help\fR
Output a help message and exit.
.TP
\fB\-V\fR, \fB\-\-version\fR
Output version information and exit.

.SH AUTHOR
Written by Daniel C. Jones <dcjones@cs.washington.edu>