.TH FASTQ-KMERS 1

.SH NAME
fastq-kmers - print the frequency of all k-mers for a given k

.SH SYNOPSIS
.B fastq-kmers [OPTION]... [FILE]...

.SH DESCRIPTION
For a given k, for example k = 4, a table in the following format is output,

.fc # ^
.ta T 2i
#kmer^frequency#
.br
#AAAA^1358#
.br
#AAAC^2393#
.br
#AAAG^1039#
.br
#AAAT^964#
.br
#AACA^4076#
.br
#...^...#
.br
#TTTT^876#

One ore more FILEs may be specified, otherwise input is read from standard input.
Input files may be gziped.

.SH OPTIONS
.TP
\fB\-k NUM\fR, \fB\-\-size=NUM\fR
The size of the k-mers to count, where 1 <= k <= 16. (default: 1)
.TP
\fB\-h\fR, \fB\-\-help\fR
Output a help message and exit.
.TP
\fB\-V\fR, \fB\-\-version\fR
Output version information and exit.

.SH AUTHOR
Written by Daniel C. Jones <dcjones@cs.washington.edu>