From 3967556124a5af953e44d032d92b59e6981fe593 Mon Sep 17 00:00:00 2001 From: Don Armstrong Date: Tue, 1 Apr 2014 10:16:44 -0700 Subject: [PATCH] factor out org configuration --- .emacs | 367 ++------------------------------------------------------- 1 file changed, 7 insertions(+), 360 deletions(-) diff --git a/.emacs b/.emacs index 910d8bf..672e569 100644 --- a/.emacs +++ b/.emacs @@ -59,6 +59,7 @@ (fset 'perl-mode 'cperl-mode) ;;(load-file "cperl-mode.el") +(add-to-list 'load-path '"~/lib/emacs_el/configuration/") (add-to-list 'load-path '"~/lib/emacs_el/") ;; this is the tiny-tools module from https://github.com/jaalto/project--emacs-tiny-tools.git (add-to-list 'load-path '"~/lib/emacs_el/tiny-tools/lisp/tiny") @@ -79,9 +80,9 @@ (require 'bibtex) (require 'post) ;;(require 'fixme) -(require 'google-weather) -(require 'org-google-weather) -(setq-default org-google-weather-format "%i %c, [%l,%h] %s %C") +; (require 'google-weather) +; (require 'org-google-weather) +; (setq-default org-google-weather-format "%i %c, [%l,%h] %s %C") ; http://julien.danjou.info/projects/emacs-packages#rainbow-mode ; this colorizes color strings @@ -90,146 +91,6 @@ (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[S]) (add-to-list 'rainbow-x-colors-major-mode-list 'ESS[R]) -; org mode agenda files -(setq org-agenda-files - (quote ("~/projects/debbugs/debbugs.org" - "~/projects/notes/notes.org" - "~/projects/origins_of_life/ool.org" - "~/projects/sysadmin/sndservers/sndservers.org" - "~/projects/chaim/chaim.org" - "~/projects/chaim/papers/gwas_paper_2012/gwas_paper.org" - "~/projects/reviews/reviews.org" - "~/projects/fh/fh.org"))) - -(setq org-global-properties '(("Effort_ALL 0 0:10 0:30 1:00 2:00 3:00 4:00 5:00 6:00 7:00"))) -(setq org-columns-default-format "%40ITEM(Task) %TAGS %PRIORITY %TODO %13SCHEDULED %13DEADLINE %6Effort{:} %CLOCKSUM") - -(setq org-default-notes-file "~/projects/notes/notes.org") -(setq org-capture-templates ;; mail-specific note template, identified by "m" - '(("m" "Mail" entry (file+headline "~/projects/notes/refile.org" "Mail") - "* %?\n\n Source: %u, %c\n %i") - ("t" "todo" entry (file "~/projects/notes/refile.org") - "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t) - ("r" "respond" entry (file "~/projects/notes/refile.org") - "* NEXT Respond to %:from on %:subject\nSCHEDULED: %t\n%U\n%a\n" :clock-in t :clock-resume t :immediate-finish t) - ("n" "note" entry (file "~/projects/notes/refile.org") - "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t) - ("s" "schedule" entry (file "~/projects/notes/refile.org") - "* %? \n%^{scheduled:}t\n%U\n%a\n" :clock-in t :clock-resume t) - ("j" "Journal" entry (file+datetree "~/projects/notes/diary.org") - "* %?\n%U\n" :clock-in t :clock-resume t) - ("w" "org-protocol" entry (file "~/projects/notes/refile.org") - "* TODO Review %c\n%U\n" :immediate-finish t) - ("p" "Phone call" entry (file "~/projects/notes/refile.org") - "* PHONE %? :PHONE:\n%U" :clock-in t :clock-resume t) - ("h" "Habit" entry (file "~/projects/notes/refile.org") - "* NEXT %?\n%U\n%a\nSCHEDULED: %(format-time-string \"<%Y-%m-%d %a .+1d/3d>\")\n:PROPERTIES:\n:STYLE: habit\n:REPEAT_TO_STATE: NEXT\n:END:\n") - ) - ) - -;; Remove empty LOGBOOK drawers on clock out -(defun bh/remove-empty-drawer-on-clock-out () - (interactive) - (save-excursion - (beginning-of-line 0) - (org-remove-empty-drawer-at "LOGBOOK" (point)))) - -(add-hook 'org-clock-out-hook 'bh/remove-empty-drawer-on-clock-out 'append) -; add ids on creation of nodes -(add-hook 'org-capture-prepare-finalize-hook 'org-id-get-create) -; create function to create headlines in file. This comes from -; http://stackoverflow.com/questions/13340616/assign-ids-to-every-entry-in-org-mode -(defun my/org-add-ids-to-headlines-in-file () - "Add ID properties to all headlines in the current file which -do not already have one." - (interactive) - (org-map-entries 'org-id-get-create)) -; if we wanted to do this to every buffer, do the following: -; (add-hook 'org-mode-hook -; (lambda () -; (add-hook 'before-save-hook 'my/org-add-ids-to-headlines-in-file nil 'local))) - - -; resolve clocks after 10 minutes of idle; use xprintidle -(setq org-clock-idle-time 10) -(setq org-clock-x11idle-program-name "xprintidle") - -; this is from http://doc.norang.ca/org-mode.html#Capture -; use C-M-r for org mode capture -(global-set-key (kbd "C-M-r") 'org-capture) - -; Targets include this file and any file contributing to the agenda - up to 9 levels deep -(setq org-refile-targets (quote ((nil :maxlevel . 9) - (org-agenda-files :maxlevel . 9)))) - -; Use full outline paths for refile targets - we file directly with IDO -(setq org-refile-use-outline-path t) - -; Targets complete directly with IDO -(setq org-outline-path-complete-in-steps nil) - -; Allow refile to create parent tasks with confirmation -(setq org-refile-allow-creating-parent-nodes (quote confirm)) - -; Use IDO for both buffer and file completion and ido-everywhere to t -(setq org-completion-use-ido t) -(setq ido-everywhere t) -(setq ido-max-directory-size 100000) -(ido-mode (quote both)) - -;;;; Refile settings -; Exclude DONE state tasks from refile targets -(defun bh/verify-refile-target () - "Exclude todo keywords with a done state from refile targets" - (not (member (nth 2 (org-heading-components)) org-done-keywords))) - -(setq org-refile-target-verify-function 'bh/verify-refile-target) - -;; ensure that emacsclient will show just the note to be edited when invoked -;; from Mutt, and that it will shut down emacsclient once finished; -;; fallback to legacy behavior when not invoked via org-protocol. -(require 'org-protocol) -(add-hook 'org-capture-mode-hook 'delete-other-windows) -(setq my-org-protocol-flag nil) -(defadvice org-capture-finalize (after delete-frame-at-end activate) - "Delete frame at remember finalization" - (progn (if my-org-protocol-flag (delete-frame)) - (setq my-org-protocol-flag nil))) -(defadvice org-capture-refile (around delete-frame-after-refile activate) - "Delete frame at remember refile" - (if my-org-protocol-flag - (progn - (setq my-org-protocol-flag nil) - ad-do-it - (delete-frame)) - ad-do-it) - ) -(defadvice org-capture-kill (after delete-frame-at-end activate) - "Delete frame at remember abort" - (progn (if my-org-protocol-flag (delete-frame)) - (setq my-org-protocol-flag nil))) -(defadvice org-protocol-capture (before set-org-protocol-flag activate) - (setq my-org-protocol-flag t)) - - -;; org modules -(add-to-list 'org-modules 'org-habit) - -; this comes from http://upsilon.cc/~zack/blog/posts/2010/02/integrating_Mutt_with_Org-mode/ -(defun open-mail-in-mutt (message) - "Open a mail message in Mutt, using an external terminal. - -Message can be specified either by a path pointing inside a -Maildir, or by Message-ID." - (interactive "MPath or Message-ID: ") - (shell-command - (format "faf xterm -e \"%s %s\"" - (substitute-in-file-name "$HOME/bin/mutt_open") message))) - -;; add support for "mutt:ID" links -(org-add-link-type "mutt" 'open-mail-in-mutt) - - (global-set-key "\C-xp" 'server-edit) (setq-default auto-mode-alist (cons '("\.wml$" . @@ -508,15 +369,6 @@ Argument DESCRIPTION MIME description." (put 'downcase-region 'disabled nil) (put 'narrow-to-region 'disabled nil) -;; The following lines are always needed. Choose your own keys. -(add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode)) -(add-hook 'org-mode-hook 'turn-on-font-lock) ; not needed when global-font-lock-mode is on -(global-set-key "\C-cl" 'org-store-link) -(global-set-key "\C-ca" 'org-agenda) -(global-set-key "\C-cb" 'org-iswitchb) -(setq-default org-log-done 'time) -(setq-default org-agenda-ndays 5) - (autoload 'flyspell-mode "flyspell" "On-the-fly spelling checker." t) (add-hook 'message-mode-hook 'turn-on-flyspell) @@ -565,174 +417,6 @@ Argument DESCRIPTION MIME description." (define-key cm-map "b" 'outline-backward-same-level) ; Backward - same level (global-set-key "\M-o" cm-map) -(defun my-org-mode-setup () - (load-library "reftex") - (and (buffer-file-name) - (file-exists-p (buffer-file-name)) - (progn - (reftex-parse-all) - (reftex-set-cite-format - '((?b . "[[bib::%l][%l-bib]]") - (?n . "[[note::%l][%l-notes]]") - (?c . "\\cite{%l}") - (?h . "*** %t\n:PROPERTIES:\n:Custom_ID: %l\n:END:\n[[papers:%l][%l paper]]"))) - )) - (define-key org-mode-map (kbd "C-c )") 'reftex-citation) - (define-key org-mode-map (kbd "C-c [") 'reftex-citation) - (define-key org-mode-map (kbd "C-c (") 'org-mode-reftex-search) - (define-key org-mode-map (kbd "C-c 0") 'reftex-view-crossref) - ) -(add-hook 'org-mode-hook 'my-org-mode-setup) - -(defun org-mode-reftex-search () - (interactive) - (org-open-link-from-string (format "[[notes:%s]]" (reftex-citation t)))) - -(defun open-research-paper (bibtexkey) - "Open a paper by bibtex key" - (interactive "bibtex key: ") - (shell-command - (format "%s %s" - (substitute-in-file-name "$HOME/bin/bibtex_to_paper") bibtexkey))) -(org-add-link-type "papers" 'open-research-paper) - -; I pretty much always want hiearchical checkboxes -(setq org-hierachical-checkbox-statistics nil) - -;; stolen from -;; http://www-public.it-sudparis.eu/~berger_o/weblog/2012/03/23/how-to-manage-and-export-bibliographic-notesrefs-in-org-mode/ -(defun my-rtcite-export-handler (path desc format) - (message "my-rtcite-export-handler is called : path = %s, desc = %s, format = %s" path desc format) - (let* ((search (when (string-match "::#?\\(.+\\)\\'" path) - (match-string 1 path))) - (path (substring path 0 (match-beginning 0)))) - (cond ((eq format 'latex) - (if (or (not desc) - (equal 0 (search "rtcite:" desc))) - (format "\\cite{%s}" search) - (format "\\cite[%s]{%s}" desc search)))))) - -(org-add-link-type "rtcite" - 'org-bibtex-open - 'my-rtcite-export-handler) - - -(setq-default org-mobile-directory "/rzlab.ucr.edu:/sites/dav.donarmstrong.com/root/org/") -(setq-default org-directory "/home/don/org-mode/") -(setq-default org-mobile-inbox-for-pull "/home/don/org-mode/from-mobile.org") - -;; org mode ical export -(setq org-icalendar-timezone "America/Los_Angeles") -(setq org-icalendar-use-scheduled '(todo-start event-if-todo)) -(setq org-icalendar-store-UID t) - -;; org babel support -(org-babel-do-load-languages - 'org-babel-load-languages - '((emacs-lisp . t ) - (R . t) - (latex . t))) -;; org-babel-by-backend -(defmacro org-babel-by-backend (&rest body) - `(case (if (boundp 'backend) - (org-export-backend-name backend) - nil) ,@body)) - - - -;; org latex -;; stolen from http://kieranhealy.org/esk/kjhealy.html -(require 'org-latex) -;; Choose either listings or minted for exporting source code blocks. -;; Using minted (as here) requires pygments be installed. To use the -;; default listings package instead, use -;; (setq org-latex-listings t) -;; and change references to "minted" below to "listings" -; (setq org-latex-listings 'minted) - -;; default settings for minted code blocks -(setq org-latex-minted-options - '(;("frame" "single") - ("bgcolor" "bg") ; bg will need to be defined in the preamble of your document. It's defined in org-preamble-pdflatex.sty and org-preamble-xelatex.sty below. - ("fontsize" "\\small") - )) -;; turn off the default toc behavior; deal with it properly in headers to files. -(defun org-latex-no-toc (depth) - (when depth - (format "%% Org-mode is exporting headings to %s levels.\n" - depth))) -(setq org-latex-format-toc-function 'org-latex-no-toc) - -(require 'ox-latex) -(add-to-list 'org-latex-classes - '("memarticle" - "\\documentclass[11pt,oneside,article]{memoir}\n" - ("\\section{%s}" . "\\section*{%s}") - ("\\subsection{%s}" . "\\subsection*{%s}") - ("\\subsubsection{%s}" . "\\subsubsection*{%s}") - ("\\paragraph{%s}" . "\\paragraph*{%s}") - ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))) - -(add-to-list 'org-latex-classes - '("membook" - "\\documentclass[11pt,oneside]{memoir}\n" - ("\\chapter{%s}" . "\\chapter*{%s}") - ("\\section{%s}" . "\\section*{%s}") - ("\\subsection{%s}" . "\\subsection*{%s}") - ("\\subsubsection{%s}" . "\\subsubsection*{%s}"))) - -(add-to-list 'org-latex-classes - '("letter" - "\\documentclass[11pt]{letter} -[NO-DEFAULT-PACKAGES] -[PACKAGES] -[EXTRA]" - ("\\section{%s}" . "\\section*{%s}") - ("\\subsection{%s}" . "\\subsection*{%s}") - ("\\subsubsection{%s}" . "\\subsubsection*{%s}") - ("\\paragraph{%s}" . "\\paragraph*{%s}") - ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))) - -;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432 -;; but adapted to use latexmk 4.22 or higher. -(setq org-latex-pdf-process '("latexmk -pdflatex=xelatex -bibtex -use-make -pdf %f")) - -;; Default packages included in /every/ tex file, latex, pdflatex or xelatex -(setq org-latex-default-packages-alist - '()) -(setq org-latex-packages-alist - '(("" "graphicx" t) - ("" "fontspec" t) - ("" "xunicode" t) - ("" "hyperref" t) - ("" "url" t) - ("" "rotating" t) - ("" "longtable" nil) - ("" "float" ))) - -(defun org-create-formula--latex-header () - "Return LaTeX header appropriate for previewing a LaTeX snippet." - (let ((info (org-combine-plists (org-export--get-global-options - (org-export-get-backend 'latex)) - (org-export--get-inbuffer-options - (org-export-get-backend 'latex))))) - (org-latex-guess-babel-language - (org-latex-guess-inputenc - (org-splice-latex-header - org-format-latex-header - org-latex-default-packages-alist - nil t - (plist-get info :latex-header))) - info))) - - -; support ignoring headers in org mode export to latex -; from http://article.gmane.org/gmane.emacs.orgmode/67692 -(defadvice org-latex-headline (around my-latex-skip-headlines - (headline contents info) activate) - (if (member "ignoreheading" (org-element-property :tags headline)) - (setq ad-return-value contents) - ad-do-it)) ; debian stuff (setq-default debian-changelog-mailing-address "don@debian.org") @@ -762,46 +446,6 @@ Argument DESCRIPTION MIME description." (setq mweb-filename-extensions '("php" "htm" "html" "ctp" "phtml" "php4" "php5")) (multi-web-global-mode 1) -; clean-mode-line from http://www.masteringemacs.org/articles/2012/09/10/hiding-replacing-modeline-strings/ -(defvar mode-line-cleaner-alist - `((auto-complete-mode . " α") - (yas/minor-mode . " υ") - (paredit-mode . " π") - (eldoc-mode . "") - (abbrev-mode . "") - (my-keys-minor-mode . "") - ;; Major modes - (lisp-interaction-mode . "λ") - (hi-lock-mode . "") - (python-mode . "Py") - (cperl-mode . "ρ") - (auctex-mode . "Lχ") - (org-agenda-mode . "øα") - (org-mode . "ø") - (emacs-lisp-mode . "EL") - (nxhtml-mode . "nx")) - "Alist for `clean-mode-line'. - -When you add a new element to the alist, keep in mind that you -must pass the correct minor/major mode symbol and a string you -want to use in the modeline *in lieu of* the original.") - - -(defun clean-mode-line () - (interactive) - (loop for cleaner in mode-line-cleaner-alist - do (let* ((mode (car cleaner)) - (mode-str (cdr cleaner)) - (old-mode-str (cdr (assq mode minor-mode-alist)))) - (when old-mode-str - (setcar old-mode-str mode-str)) - ;; major mode - (when (eq mode major-mode) - (setq mode-name mode-str))))) - - -(add-hook 'after-change-major-mode-hook 'clean-mode-line) - ;;; alias the new `flymake-report-status-slim' to ;;; `flymake-report-status' (defalias 'flymake-report-status 'flymake-report-status-slim) @@ -913,6 +557,9 @@ want to use in the modeline *in lieu of* the original.") ) ) +; require org mode +(load "org-mode-configuration") + ; apparently things like to step on C-;, so we'll use a hack from ; http://stackoverflow.com/questions/683425/globally-override-key-binding-in-emacs/5340797#5340797 to fix this -- 2.39.2