From b33481a5a69e43120ed0d067d3692bb67929d940 Mon Sep 17 00:00:00 2001 From: Don Armstrong Date: Thu, 23 Mar 2017 13:57:05 -0700 Subject: [PATCH] link to tree id --- posts/shrinking_gene_names.mdwn | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/posts/shrinking_gene_names.mdwn b/posts/shrinking_gene_names.mdwn index 7d2be06..410b4d6 100644 --- a/posts/shrinking_gene_names.mdwn +++ b/posts/shrinking_gene_names.mdwn @@ -3,10 +3,12 @@ I've been trying to finish a paper where I compare gene expression in 14 different placentas. One of the supplemental figures compares median expression in gene trees across all 14 species, but because -tree names like ENT000001 aren't very expressive, and names like +tree ids like +[ENSGT00840000129673](http://www.ensembl.org/Multi/GeneTree/Image?gt=ENSGT00840000129673) +aren't very expressive, and names like "COL11A2, COL5A3, COL4A1, COL1A1, COL2A1, COL1A2, COL4A6, COL4A5, COL7A1, COL27A1, COL11A1, COL4A4, COL4A3, COL3A1, COL4A2, COL5A2, -COL5A1, COL24A1" take up too much space, wanted a function which could +COL5A1, COL24A1" take up too much space, I wanted a function which could collapse the gene names into something which uses bash glob syntax to more succinctly list the gene names, like: COL{11A{1,2},1A{1,2},24A1,27A1,2A1,3A1,4A{1,2,3,4,5,6},5A{1,2,3},7A1}. -- 2.39.2