separate out into paragraphs

diff --git a/resume.mdwn b/resume.mdwn
index 6443b3816ff3985856b29becd6bd35543fc85ced..400c266e88a6c831c4f47f53c642b601b1343a98 100644 (file)
--- a/resume.mdwn
+++ b/resume.mdwn
@@ -17,6 +17,7 @@
   scientific research, and modern statistical methodology.
 + Wrote software and designed relational databases using R, perl, C,
   SQL, make, and very large computational systems.
   scientific research, and modern statistical methodology.
 + Wrote software and designed relational databases using R, perl, C,
   SQL, make, and very large computational systems.

+

 ## Postdoctoral Researcher at USC  2013--2015
 + Primarily responsible for the design, execution, and analysis of an
   epidemiological study to identify genomic variants associated with
 ## Postdoctoral Researcher at USC  2013--2015
 + Primarily responsible for the design, execution, and analysis of an
   epidemiological study to identify genomic variants associated with


@@ -28,6 +29,7 @@
   archive large datasets resulting from genomic sequencing.
 + Coordinated with clinicians, molecular biologists, and biologists to
   produce analyses and major reports.
   archive large datasets resulting from genomic sequencing.
 + Coordinated with clinicians, molecular biologists, and biologists to
   produce analyses and major reports.

+

 ## Postdoctoral Researcher at UCR  2010--2012
 + Primarily responsible for the execution and analysis of an
   epidemiological study to identify genomic variants associated with
 ## Postdoctoral Researcher at UCR  2010--2012
 + Primarily responsible for the execution and analysis of an
   epidemiological study to identify genomic variants associated with


@@ -36,6 +38,7 @@
   the Los Angeles and greater United States.
 + Wrote and maintained multiple software components to reproducibly
   perform the analyses.
   the Los Angeles and greater United States.
 + Wrote and maintained multiple software components to reproducibly
   perform the analyses.

+

 ## Debian Developer  2004--Present
 + Maintained, managed configurations, and resolved issues in multiple
   packages written in R, perl, python, scheme, C++, and C.
 ## Debian Developer  2004--Present
 + Maintained, managed configurations, and resolved issues in multiple
   packages written in R, perl, python, scheme, C++, and C.


@@ -43,6 +46,7 @@
   provided leadership as the elected chair of the Technical Committee.
 + Developer of [Debbugs](https://bugs.debian.org), a perl and SQL-based issue-tracker with ≥ 100
   million entries with web, REST, and SOAP interfaces.
   provided leadership as the elected chair of the Technical Committee.
 + Developer of [Debbugs](https://bugs.debian.org), a perl and SQL-based issue-tracker with ≥ 100
   million entries with web, REST, and SOAP interfaces.

+

 ## Independent Systems Administrator  2004--Present
 + Researched, recommended, budgeted, designed, deployed, configured,
   operated, and monitored highly-available high-performance enterprise
 ## Independent Systems Administrator  2004--Present
 + Researched, recommended, budgeted, designed, deployed, configured,
   operated, and monitored highly-available high-performance enterprise


@@ -53,6 +57,7 @@
 + Full life-cycle support of medium and small business networking
   infrastructure, including VPN, network security, wireless networks,
   routing, DNS, DHCP, and authentication.
 + Full life-cycle support of medium and small business networking
   infrastructure, including VPN, network security, wireless networks,
   routing, DNS, DHCP, and authentication.

+

 # Education
 + Doctor of Philosophy (PhD) in Cell, Molecular and Developmental Biology at UC Riverside
 + Batchelor of Science (BS) in Biology at UC Riverside
 # Education
 + Doctor of Philosophy (PhD) in Cell, Molecular and Developmental Biology at UC Riverside
 + Batchelor of Science (BS) in Biology at UC Riverside


@@ -72,6 +77,7 @@
 + Data mining, cleaning, processing and quality assurance of data
   sources and products using tidydata formalisms
 + Visualization using *R*, ggplot, Shiny, and custom written routines.
 + Data mining, cleaning, processing and quality assurance of data
   sources and products using tidydata formalisms
 + Visualization using *R*, ggplot, Shiny, and custom written routines.

+

 ## Software Development
 + Languages: perl, R, C, C++, python, groovy, sh, make
 + Collaborative Development: git, travis, continuous integration,
 ## Software Development
 + Languages: perl, R, C, C++, python, groovy, sh, make
 + Collaborative Development: git, travis, continuous integration,


@@ -80,6 +86,7 @@
 + Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
 + Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
   Powerpoint
 + Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
 + Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
   Powerpoint

+

 ## Genomics and Epigenomics
 + NGS and array-based Genomics and Epigenomics of complex human
   diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina
 ## Genomics and Epigenomics
 + NGS and array-based Genomics and Epigenomics of complex human
   diseases using RNA-seq, targeted DNA sequencing, RRBS, Illumina


@@ -94,35 +101,42 @@
   testing, confounders, and batch effects using Bayesian and
   frequentist methods approaches
 + Using evolutionary genomics to identify causal human variants
   testing, confounders, and batch effects using Bayesian and
   frequentist methods approaches
 + Using evolutionary genomics to identify causal human variants

+

 ## Statistics
 + Statistical modeling (regression, inference, prediction, and
   learning in very large (> 1TB) datasets)
 + Addressing confounders and batch effects
 + Reproducible research
 ## Statistics
 + Statistical modeling (regression, inference, prediction, and
   learning in very large (> 1TB) datasets)
 + Addressing confounders and batch effects
 + Reproducible research

+

 ## Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
 + Inter-process communication: MPI, OpenMP
 + Filestorage: Gluster, CEFS, GPFS, Lustre
 + Linux system administration
 ## Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
 + Inter-process communication: MPI, OpenMP
 + Filestorage: Gluster, CEFS, GPFS, Lustre
 + Linux system administration

+

 ## Genomics and Epigenomics
 + Linkage and association-based mapping of complex phenotypes using
   next-generation sequencing and arrays
 + Alignment, annotation, and variant calling using existing and custom
   software
 ## Genomics and Epigenomics
 + Linkage and association-based mapping of complex phenotypes using
   next-generation sequencing and arrays
 + Alignment, annotation, and variant calling using existing and custom
   software

+

 ## Mentoring and Leadership
 + Mentored graduate students and Outreachy and Google Summer of Code
   interns
 + Former chair of Debian's Technical Committee
 ## Mentoring and Leadership
 + Mentored graduate students and Outreachy and Google Summer of Code
   interns
 + Former chair of Debian's Technical Committee

+

 ## Communication
 + Strong written communication skills as evidenced by publication
   record
 + Strong verbal and presentation skills as evidenced by presentation
   and teaching record
 ## Communication
 + Strong written communication skills as evidenced by publication
   record
 + Strong verbal and presentation skills as evidenced by presentation
   and teaching record

+

 ## Consortia Involvement
 + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
 + *Psychiatric Genomics Consortium*: Identification of epigenetic
   variants which are correlated with PTSD.
 + *SLEGEN*: System lupus erythematosus genetics consortium.
 ## Consortia Involvement
 + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
 + *Psychiatric Genomics Consortium*: Identification of epigenetic
   variants which are correlated with PTSD.
 + *SLEGEN*: System lupus erythematosus genetics consortium.

+

 # Authored Software
 + *[Debbugs](http://bugs.debian.org)*: Bug tracking software for the Debian GNU/Linux
    distribution. [https://bugs.debian.org]
 # Authored Software
 + *[Debbugs](http://bugs.debian.org)*: Bug tracking software for the Debian GNU/Linux
    distribution. [https://bugs.debian.org]


@@ -131,6 +145,7 @@
    enables Bayesian approaches to significance testing.
 + *[Helical Wheel Projections](http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit)*: Web-based tool to draw helical wheel
    protein projections. [http://rzlab.ucr.edu/scripts/wheel]
    enables Bayesian approaches to significance testing.
 + *[Helical Wheel Projections](http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit)*: Web-based tool to draw helical wheel
    protein projections. [http://rzlab.ucr.edu/scripts/wheel]

+

 # Publications and Presentations
 + 24 peer-reviewed publications cited over 1800 times:
   https://dla2.us/pubs
 # Publications and Presentations
 + 24 peer-reviewed publications cited over 1800 times:
   https://dla2.us/pubs


@@ -149,11 +164,12 @@
   RFA-HD-16-037) Role: Key Personnel
 + *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob.
   Role: Key Personnel
   RFA-HD-16-037) Role: Key Personnel
 + *NIAMS* R01-AR045650-04 *Genetics of Childhood Onset SLE* to Chaim O. Jacob.
   Role: Key Personnel

+

 ## Scholarships and Fellowships
 + 2001--2003: University of California, Riverside Doctoral Fellowship
 + 1997--2001: Regents of the University of California Scholarship.
 
 ## Scholarships and Fellowships
 + 2001--2003: University of California, Riverside Doctoral Fellowship
 + 1997--2001: Regents of the University of California Scholarship.
 

-#Academic Information
+# Academic Information

 
 You can also read my [curriculum_vitae](Curriculum Vitæ)
 ([dla-cv.pdf](pdf)), [research_statement](Research Statement)
 
 You can also read my [curriculum_vitae](Curriculum Vitæ)
 ([dla-cv.pdf](pdf)), [research_statement](Research Statement)