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 [[!meta title="Curriculum Vitæ, Research Statement, and Teaching Statement"]]
 
 [[!meta title="Curriculum Vitæ, Research Statement, and Teaching Statement"]]
 

-Introduction
-------------
-
-A brief statement of my research interests and teaching mission
-follows, and my [Curriculum Vitæ](curriculum_vitae)
-([pdf](dla-cv.pdf)),
-[Research Statement](research_statement)
-([pdf](research_statement.pdf)), and
-[Teaching Statement](teaching_statement)
-([pdf](teaching_statement.pdf)) are also available.
-
-For my contact information or additional references, please e-mail
-<don@donarmstrong.com>
+# Education
+## UC Riverside
++ **PhD** in Cell, Molecular and Developmental Biology
++ **BS** in Biology
+# Skills
+## Genomics and Epigenomics
++ Genomics and Epigenomics of complex human diseases including
+  PTSD, Systemic Lupus Erythematosus, and Alzheimer's Disease using
+  cross-sectional and longitudinal experimental designs
++ Correcting for and experimental design to overcome multiple
+  testing, confounders, and batch effects using Bayesian and
+  frequentist methods approaches
++ Reproducible, scalable analysis using workflows on cloud- and
+  cluster-based systems on terabyte-scale datasets
++ Using evolutionary genomics to identify causal human variants
+## Statistics
++ Statistical modeling
++ Addressing confounders and batch effects
++ Reproducible research
+## Big Data
++ Parallel and Cloud Computing
++ Inter-process communication: MPI, OpenMP, Hadoop
++ Filestorage: Gluster, CEFS, GPFS, Lustre
++ Cloud based-infrastructure: Azure, AWS, Docker, cloud-init
++ Debian GNU/Linux system administration
+## Mentoring and Leadership
++ Mentored graduate students and Outreachy and Google Summer of Code
+  interns
++ Chairperson of the Debian Technical Committee
++ Head developer behind https://bugs.debian.org
+## Software Development
++ Languages: perl, R, C, C++, python, groovy, assembly, sh, make
++ Collaborative Development: git, travis, continuous integration,
+  automated testing
++ Databases: Postgresql (PL/SQL), SQLite, Mysql
+## Communication
++ Strong written communication skills as evidenced by publication
+  record
++ Strong verbal and presentation skills as evidenced by presentation
+  and teaching record

 
 

-Research Focus
---------------
+# Experience
+## Research Scientist at UIUC
++ 2015--Present. University of Illinois at Urbana-Champaign. Epigenetic
+  modifications associated with PTSD, the genomic basis of the
+  development of parturition in mammals, and detecting adverse
+  pregnancy outcomes using urinary exosomes.
+## Postdoctoral Researcher at USC
++ 2013--2015. Identifying genes and causal alleles associated with
+  Systemic Lupus Erythematosus using genome-wide association,
+  next-generation sequencing, computational and biochemical
+  approaches.
+## Postdoctoral Researcher at UCR
++ 2010--2012. Identifying genes which are associated with Systemic
+  Lupus Erythematosus using prior information and targeted trio-based
+  studies.
+## Debian Developer
++ 2004--Present. \emph{Debian Project}, Developer; Technical Committee
+  Member (2010--Present), Technical Committee Chair (2015--2016).
+# Authored Software
++ **[Debbugs](http://bugs.debian.org)**: Bug tracking software for the Debian GNU/Linux
+   distribution. [https://bugs.debian.org]
++ **[CairoHacks](http://git.donarmstrong.com/r/CairoHacks.git)**:
+  Bookmarks and Raster images for large PDF plots in R.
++ **[Function2Gene](http://rzlab.ucr.edu/function2gene/)**: Gene
+   selection tool based on literature mining which enables Bayesian
+   approaches to significance testing.
++ **[Helical Wheel Projections](http://rzlab.ucr.edu/scripts/wheel/wheel.cgi?sequence=ABCDEFGHIJLKMNOP&submit=Submit)**:
+   Web-based tool to draw helical wheel protein projections.
+   [http://rzlab.ucr.edu/scripts/wheel]
+* Publications and Presentations
++ 20 peer-reviewed refereed publications cited over 1700 times:
+  [https://dla2.us/pubs]
++ Publication record in GWAS, expression analysis of microarrays,
+  epigenetics, comparative evolution of mammals, and lipid membranes
++ H index of 11
++ Multiple presentations on EWAS of PTSD, genetics of SLE, and Open
+  Source: [https://dla2.us/pres]

 
 

-My primary research focus is developing and using bioinformatics
-techniques to identify causes and mechanisms underlying human
-diseases, such as Systemic Lupus Erythematosus (SLE). I have
-identified multiple novel genes associated with SLE using both
-genome-wide association studies and trio-based studies in targeted
-regions. In collaborative work, I have identified a causal variant in
-NCF2
-([rs17849502](http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=rs17849502))
-using both *in silico* and *in vitro* approaches. I am currently
-working on identifying causal variants in additional associated genes
-using targeted deep sequencing using high-throughput variant analysis
-pipelines to prioritize variants for additional *in silico* and *in
-vitro* experiments. In the future, utilizing my extensive
-bioinformatic and software development experience, I will head a
-development group working on techniques for the storage, alignment,
-and analysis of terabytes (eventually petabytes) of next-generation
-sequencing data from collaborations studying human-relevant diseases
-and biological systems.
+# Funding and Awards
+## Grants
++ 2017 R Consortium:
+  **[Adding Linux Binary Builders to R-Hub](https://www.r-consortium.org/blog/2017/04/03/q1-2017-isc-grants)**
+  Role: Co-PI
++ 2015 Blue Waters Allocation Grant: **Making ancestral trees using Bayesian
+  inference to identify disease-causing genetic variants** Role:
+  Primary Investigator
++ **Tracking placenta and uterine funciton using urinary extracellular vesicles** (R21
+  RFA-HD-16-037) Role: Key Personnel
++ **NIAMS** R01-AR045650-04 **Genetics of Childhood Onset SLE** to Chaim O. Jacob.
+  Role: Key Personnel
+## Scholarships and Fellowships
++ 2001--2003: University of California, Riverside Doctoral Fellowship
++ 1997--2001: Regents of the University of California Scholarship.

 
 

+Academic Information
+------------

 
 

-Teaching Mission
-----------------
-
-While teaching, my primary mission is to have my students experience
-the excitement of scientific discovery for themselves. Secondarily, I
-use that excitement to keep them engaged and interested in the
-material. While a graduate student at UC Riverside, I was a teaching
-assistant for [Introductory Biology, Genetics, Molecular Biology, and
-Developmental Biology](http://www.biology.ucr.edu/courses/UGcourses.html)
+You can also read my [Curriculum Vitæ](curriculum_vitae)
+([pdf](dla-cv.pdf)), [Research Statement](research_statement)
+([pdf](research_statement.pdf)),
+and [Teaching Statement](teaching_statement)
+([pdf](teaching_statement.pdf)).

 
 

+For my contact information or additional references, please e-mail
+<don@donarmstrong.com>