From: Don Armstrong <don@donarmstrong.com>
Date: Mon, 12 Dec 2011 22:06:10 +0000 (-0800)
Subject: add load data
X-Git-Url: https://git.donarmstrong.com/?p=dbsnp.git;a=commitdiff_plain;h=12865ce31f7eb369ad1d5ac3425fb580b9139ff6

add load data
---

diff --git a/utils/load_snp_data.sh b/utils/load_snp_data.sh
new file mode 100755
index 0000000..5eae047
--- /dev/null
+++ b/utils/load_snp_data.sh
@@ -0,0 +1,35 @@
+#!/bin/sh
+
+psql -c 'DROP DATABASE snp';
+psql -c 'CREATE DATABASE snp';
+
+DATA_DIR=/srv/ncbi/db_snp/
+SCHEMA_DIR=/srv/ncbi/db_snp_utils/schema
+UTIL_DIR=${SCHEMA_DIR}/../utils/
+
+(cd ${SCHEMA_DIR}/shared_schema;
+    cat dbSNP_main_table_postgresql.sql |psql snp;
+)
+(cd ${SCHEMA_DIR}/human_9606_schema;
+    cat *_table_postgresql.sql|psql snp;
+    ${UTIL_DIR}/human_gty1_indexes_creation.pl create trigger |psql snp;
+)
+(cd ${DATA_DIR}/shared_data;
+    for a in $(find -type f -iname '*.bcp.gz' -printf '%f\n'|sort); do
+	echo $a;
+	zcat $a | perl -pe 's/\r/\\r/g' |psql snp -c "COPY ${a%%.bcp.gz} FROM STDIN WITH NULL ''";
+    done;
+)
+(cd ${DATA_DIR}/organism_data;
+    for a in $(find -type f -iname '*.bcp.gz' -printf '%f\n'|sort); do
+	echo $a;
+	zcat $a | perl -pe 's/\r/\\r/g' |psql snp -c "COPY ${a%%.bcp.gz} FROM STDIN WITH NULL ''";
+    done;
+)
+(cd ${SCHEMA_DIR}/shared_schema;
+    cat dbSNP_main_index_postgresql.sql dbSNP_main_constraint_postgresql.sql|psql snp;
+)
+(cd ${SCHEMA_DIR}/human_9606_schema;
+    cat *_{index,constraint}_postgresql.sql|psql snp;
+    ${UTIL_DIR}/human_gty1_indexes_creation.pl index |psql snp;
+)