ALTER TABLE [ClinSigCode] ADD CONSTRAINT [DF__ClinSigCo__creat__5FBB8CD0] DEFAULT (GETDATE()) FOR [create_time]
ALTER TABLE [ClinSigCode] ADD CONSTRAINT [DF__ClinSigCo__last___60AFB109] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [ClinSigCode] ADD CONSTRAINT [DF__ClinSigCo__sever__58B68DF4] DEFAULT ((0)) FOR [severity_level]
ALTER TABLE [ClinSigCode] ADD CONSTRAINT [PK__ClinSigC__357D4CF85DD3445E] PRIMARY KEY CLUSTERED ([code] ASC)\r
GO
ALTER TABLE [Individual] ADD CONSTRAINT [pk_Individual] PRIMARY KEY CLUSTERED ([ind_id] ASC)\r
GO
-ALTER TABLE [OmimVarLocusIdSNP] ADD CONSTRAINT [fk_OmimVarLocusIdSNP_snp_id] FOREIGN KEY (snp_id) REFERENCES [b134_SNP](snp_id)\r
+ALTER TABLE [OmimVarLocusIdSNP] ADD CONSTRAINT [fk_OmimVarLocusIdSNP_snp_id] FOREIGN KEY (snp_id) REFERENCES [b135_SNP](snp_id)\r
GO
ALTER TABLE [Pedigree] ADD CONSTRAINT [p_ped_id] PRIMARY KEY CLUSTERED ([ped_id] ASC)\r
ALTER TABLE [SNPAncestralAllele] ADD CONSTRAINT [pk_SNPAncestralAllele] PRIMARY KEY CLUSTERED ([snp_id] ASC,[batch_id] ASC)\r
GO
-ALTER TABLE [SNPClinSig] ADD CONSTRAINT [DF__SNPClinSi__upd_t__1BBC3395] DEFAULT (GETDATE()) FOR [upd_time]
-ALTER TABLE [SNPClinSig] ADD CONSTRAINT [PK__SNPClinS__430A13A119D3EB23] PRIMARY KEY CLUSTERED ([snp_id] ASC)\r
-GO
ALTER TABLE [SNPGtyFreq] ADD CONSTRAINT [pk_SNPGtyFreq] PRIMARY KEY CLUSTERED ([snp_id] ASC,[unigty_id] ASC)\r
GO
GO
-ALTER TABLE [SNPSubSNPLink] ADD CONSTRAINT [fk_SNPSubSNPLink_ss] FOREIGN KEY (subsnp_id) REFERENCES [SubSNP](subsnp_id)\r
-GO
ALTER TABLE [SNPSuspect] ADD CONSTRAINT [DF__SNPSuspec__upd_t__18BF0002] DEFAULT (GETDATE()) FOR [upd_time]
ALTER TABLE [SNPVal] ADD CONSTRAINT [pk_SNPVal] PRIMARY KEY CLUSTERED ([batch_id] ASC,[snp_id] ASC)\r
GO
+ALTER TABLE [SNP_HGVS] ADD CONSTRAINT [fk_SNP_HGVS] FOREIGN KEY (snp_id) REFERENCES [b135_SNP](snp_id)\r
+GO
ALTER TABLE [SNP_bitfield] ADD CONSTRAINT [pk_SNP_bitfield] PRIMARY KEY CLUSTERED ([snp_id] ASC)\r
GO
ALTER TABLE [SubmittedIndividual] ADD CONSTRAINT [pk_SubmittedIndividual] PRIMARY KEY CLUSTERED ([pop_id] ASC,[loc_ind_id_upp] ASC)\r
GO
+ALTER TABLE [SuspectReasonCode] ADD CONSTRAINT [DF__SuspectRe__creat__130626AC] DEFAULT (GETDATE()) FOR [create_time]
+ALTER TABLE [SuspectReasonCode] ADD CONSTRAINT [DF__SuspectRe__last___13FA4AE5] DEFAULT (GETDATE()) FOR [last_update_time]
+ALTER TABLE [SuspectReasonCode] ADD CONSTRAINT [PK__SuspectR__357D4CF8111DDE3A] PRIMARY KEY CLUSTERED ([code] ASC)\r
+GO
+
ALTER TABLE [Synonym] ADD CONSTRAINT [pk_Synonym] PRIMARY KEY NONCLUSTERED ([subsnp_id] ASC,[type] ASC)\r
GO
-ALTER TABLE [b135_ContigInfo_37_3] ADD CONSTRAINT [df_b135_ContigInfo_37_3_last_updated_time] DEFAULT (GETDATE()) FOR [last_updated_time]
-ALTER TABLE [b135_ContigInfo_37_3] ADD CONSTRAINT [pk_b135_ContigInfo_37_3] PRIMARY KEY CLUSTERED ([contig_gi] ASC)\r
+ALTER TABLE [b137_ContigInfo] ADD CONSTRAINT [df_b137_ContigInfo_last_updated_time] DEFAULT (GETDATE()) FOR [last_updated_time]
+ALTER TABLE [b137_ContigInfo] ADD CONSTRAINT [pk_b137_ContigInfo] PRIMARY KEY CLUSTERED ([contig_gi] ASC)\r
GO
+ALTER TABLE [b137_MapLink] ADD CONSTRAINT [fk_b137_MapLink_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+GO
-ALTER TABLE [b135_MapLink_37_3] ADD CONSTRAINT [fk_b135_MapLink_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
-GO
-ALTER TABLE [b135_SNPChrPosOnRef_37_3] ADD CONSTRAINT [fk_b135_SNPChrPosOnRef_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+ALTER TABLE [b137_SNPChrPosOnRef] ADD CONSTRAINT [fk_b137_SNPChrPosOnRef_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
GO
-ALTER TABLE [b135_SNPContigLoc_37_3] ADD CONSTRAINT [fk_b135_SNPContigLoc_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+ALTER TABLE [b137_SNPContigLoc] ADD CONSTRAINT [fk_b137_SNPContigLoc_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
GO
-
-ALTER TABLE [b135_SNPContigLocusId_37_3] ADD CONSTRAINT [fk_b135_SNPContigLocusId_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+ALTER TABLE [b137_SNPContigLoc] ADD CONSTRAINT [pk_b137_SNPContigLoc] PRIMARY KEY CLUSTERED ([snp_type] ASC,[snp_id] ASC,[ctg_id] ASC,[asn_from] ASC)\r
GO
-ALTER TABLE [b135_SNPContigProtein_37_3] ADD CONSTRAINT [fk_b135_SNPContigProtein_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
-GO
-ALTER TABLE [b135_SNPMapInfo_37_3] ADD CONSTRAINT [fk_b135_SNPMapInfo_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
-GO
-ALTER TABLE [b135_SNPMapLinkProtein_37_3] ADD CONSTRAINT [fk_b135_SNPMapLinkProtein_37_3_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
+ALTER TABLE [b137_SNPMapInfo] ADD CONSTRAINT [fk_b137_SNPMapInfo_rs] FOREIGN KEY (snp_id) REFERENCES [SNP](snp_id)\r
GO
+
ALTER TABLE [dn_IND_batchCount] ADD CONSTRAINT [pk_dn_IND_batchCount] PRIMARY KEY NONCLUSTERED ([batch_id] ASC,[pop_id] ASC)\r
GO
ALTER TABLE BatchValCode ADD CONSTRAINT pk_BatchValCode PRIMARY KEY (batch_id);
ALTER TABLE ClinSigCode ALTER COLUMN create_time SET DEFAULT NOW();
ALTER TABLE ClinSigCode ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE ClinSigCode ALTER COLUMN severity_level SET DEFAULT (0);
ALTER TABLE ClinSigCode ADD CONSTRAINT PK__ClinSigC__357D4CF85DD3445E PRIMARY KEY (code);
ALTER TABLE Contact ADD CONSTRAINT pk_Contact PRIMARY KEY (batch_id,handle);
ALTER TABLE GeneIdToName ADD CONSTRAINT pk_GeneIdToName PRIMARY KEY (gene_id);
ALTER TABLE IndGrpCode ADD CONSTRAINT pk_IndGrpCode PRIMARY KEY (code);
ALTER TABLE IndivBySource ADD CONSTRAINT pk_IndivBySource PRIMARY KEY (src_id,src_ind_id);
ALTER TABLE Individual ADD CONSTRAINT pk_Individual PRIMARY KEY (ind_id);
-ALTER TABLE OmimVarLocusIdSNP ADD CONSTRAINT fk_OmimVarLocusIdSNP_snp_id FOREIGN KEY (snp_id) REFERENCES b134_SNP(snp_id);
+ALTER TABLE OmimVarLocusIdSNP ADD CONSTRAINT fk_OmimVarLocusIdSNP_snp_id FOREIGN KEY (snp_id) REFERENCES b135_SNP(snp_id);
ALTER TABLE Pedigree ADD CONSTRAINT p_ped_id PRIMARY KEY (ped_id);
ALTER TABLE PedigreeIndividual ADD CONSTRAINT pk_PedigreeIndividual PRIMARY KEY (ped_id,ind_id);
ALTER TABLE PopLine ADD CONSTRAINT pk_PopLine PRIMARY KEY (pop_id,line_num);
ALTER TABLE SNPAlleleFreq ADD CONSTRAINT pk_SNPAlleleFreq PRIMARY KEY (snp_id,allele_id);
ALTER TABLE SNPAncestralAllele ALTER COLUMN batch_id SET DEFAULT (0);
ALTER TABLE SNPAncestralAllele ADD CONSTRAINT pk_SNPAncestralAllele PRIMARY KEY (snp_id,batch_id);
-ALTER TABLE SNPClinSig ALTER COLUMN upd_time SET DEFAULT NOW();
-ALTER TABLE SNPClinSig ADD CONSTRAINT PK__SNPClinS__430A13A119D3EB23 PRIMARY KEY (snp_id);
ALTER TABLE SNPGtyFreq ADD CONSTRAINT pk_SNPGtyFreq PRIMARY KEY (snp_id,unigty_id);
ALTER TABLE SNPHWProb ADD CONSTRAINT pk_SNPHWProb PRIMARY KEY (snp_id);
ALTER TABLE SNPHistory ADD CONSTRAINT pk_SNPHistory PRIMARY KEY (snp_id);
-ALTER TABLE SNPSubSNPLink ADD CONSTRAINT fk_SNPSubSNPLink_ss FOREIGN KEY (subsnp_id) REFERENCES SubSNP(subsnp_id);
ALTER TABLE SNPSuspect ALTER COLUMN upd_time SET DEFAULT NOW();
ALTER TABLE SNPSuspect ADD CONSTRAINT PK__SNPSuspe__430A13A116D6B790 PRIMARY KEY (snp_id);
ALTER TABLE SNPVal ADD CONSTRAINT pk_SNPVal PRIMARY KEY (batch_id,snp_id);
+ALTER TABLE SNP_HGVS ADD CONSTRAINT fk_SNP_HGVS FOREIGN KEY (snp_id) REFERENCES b135_SNP(snp_id);
ALTER TABLE SNP_bitfield ADD CONSTRAINT pk_SNP_bitfield PRIMARY KEY (snp_id);
ALTER TABLE SubPop ALTER COLUMN last_updated_time SET DEFAULT NOW();
ALTER TABLE SubPop ADD CONSTRAINT fk_SubPop_batch_id FOREIGN KEY (batch_id) REFERENCES Batch(batch_id);
ALTER TABLE SubSNP_top_or_bot ADD CONSTRAINT PK__t_ss_top_or_bot__0D5DFFA8 PRIMARY KEY (subsnp_id);
ALTER TABLE SubmittedIndividual ALTER COLUMN ploidy SET DEFAULT 2;
ALTER TABLE SubmittedIndividual ADD CONSTRAINT pk_SubmittedIndividual PRIMARY KEY (pop_id,loc_ind_id_upp);
+ALTER TABLE SuspectReasonCode ALTER COLUMN create_time SET DEFAULT NOW();
+ALTER TABLE SuspectReasonCode ALTER COLUMN last_update_time SET DEFAULT NOW();
+ALTER TABLE SuspectReasonCode ADD CONSTRAINT PK__SuspectR__357D4CF8111DDE3A PRIMARY KEY (code);
ALTER TABLE Synonym ADD CONSTRAINT pk_Synonym PRIMARY KEY (subsnp_id,type);
-ALTER TABLE b135_ContigInfo_37_3 ALTER COLUMN last_updated_time SET DEFAULT NOW();
-ALTER TABLE b135_ContigInfo_37_3 ADD CONSTRAINT pk_b135_ContigInfo_37_3 PRIMARY KEY (contig_gi);
-ALTER TABLE b135_MapLink_37_3 ADD CONSTRAINT fk_b135_MapLink_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
-ALTER TABLE b135_SNPChrPosOnRef_37_3 ADD CONSTRAINT fk_b135_SNPChrPosOnRef_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
-ALTER TABLE b135_SNPContigLoc_37_3 ADD CONSTRAINT fk_b135_SNPContigLoc_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
-ALTER TABLE b135_SNPContigLocusId_37_3 ADD CONSTRAINT fk_b135_SNPContigLocusId_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
-ALTER TABLE b135_SNPContigProtein_37_3 ADD CONSTRAINT fk_b135_SNPContigProtein_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
-ALTER TABLE b135_SNPMapInfo_37_3 ADD CONSTRAINT fk_b135_SNPMapInfo_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
-ALTER TABLE b135_SNPMapLinkProtein_37_3 ADD CONSTRAINT fk_b135_SNPMapLinkProtein_37_3_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b137_ContigInfo ALTER COLUMN last_updated_time SET DEFAULT NOW();
+ALTER TABLE b137_ContigInfo ADD CONSTRAINT pk_b137_ContigInfo PRIMARY KEY (contig_gi);
+ALTER TABLE b137_MapLink ADD CONSTRAINT fk_b137_MapLink_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b137_SNPChrPosOnRef ADD CONSTRAINT fk_b137_SNPChrPosOnRef_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b137_SNPContigLoc ADD CONSTRAINT fk_b137_SNPContigLoc_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
+ALTER TABLE b137_SNPContigLoc ADD CONSTRAINT pk_b137_SNPContigLoc PRIMARY KEY (snp_type,snp_id,ctg_id,asn_from);
+ALTER TABLE b137_SNPMapInfo ADD CONSTRAINT fk_b137_SNPMapInfo_rs FOREIGN KEY (snp_id) REFERENCES SNP(snp_id);
ALTER TABLE dn_IND_batchCount ADD CONSTRAINT pk_dn_IND_batchCount PRIMARY KEY (batch_id,pop_id);
ALTER TABLE dn_PopulationIndGrp ADD CONSTRAINT pk_dn_PopulationIndGrp PRIMARY KEY (pop_id);
ALTER TABLE dn_batchCount ADD CONSTRAINT pk_dn_batchCount PRIMARY KEY (batch_id);
CREATE NONCLUSTERED INDEX [i_handle_loc_pop_id] ON [Population] ([handle] ASC,[loc_pop_id] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rsL] ON [RsMergeArch] ([rsLow] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_rsH] ON [RsMergeArch] ([rsHigh] ASC)\r
+CREATE NONCLUSTERED INDEX [ndx_RsMergeArch_HI] ON [RsMergeArch] ([rsHigh] ASC)\r
GO
CREATE CLUSTERED INDEX [i_rs] ON [SNP] ([snp_id] ASC)\r
+CREATE CLUSTERED INDEX [i_rs_hgvs] ON [SNPClinSig] ([hgvs_g] ASC,[snp_id] ASC)\r
+GO
GO
CREATE NONCLUSTERED INDEX [i_var] ON [SubSNP] ([variation_id] ASC,[subsnp_id] ASC)\r
GO
+CREATE NONCLUSTERED INDEX [i_ss_bid_loc] ON [SubSNP] ([subsnp_id] ASC,[batch_id] ASC,[loc_snp_id] ASC)\r
+GO
CREATE NONCLUSTERED INDEX [i_acc_part_ind] ON [SubSNPAcc_ins] ([acc_part] ASC,[acc_type_ind] ASC,[subsnp_id] ASC)\r
GO
GO
-CREATE NONCLUSTERED INDEX [i_asm] ON [b135_ContigInfo_37_3] ([asm_acc] ASC,[asm_version] ASC,[contig_start] ASC,[contig_end] ASC,[chr_gi] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_asm_chr_ctg] ON [b135_ContigInfo_37_3] ([asm_acc] ASC,[asm_version] ASC,[chr_gi] ASC,[contig_start] ASC,[contig_end] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [idxContigLabel] ON [b135_ContigInfo_37_3] ([contig_label] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [ndx_ContigInfo_pc_37_3] ON [b135_ContigInfo_37_3] ([placement_status] ASC,[ctg_id] ASC)\r
-GO
-
-CREATE CLUSTERED INDEX [i_gi] ON [b135_MapLinkInfo_37_3] ([gi] ASC)\r
+CREATE NONCLUSTERED INDEX [i_asm_chr_ctg] ON [b137_ContigInfo] ([asm_acc] ASC,[asm_version] ASC,[chr_gi] ASC,[contig_start] ASC,[contig_end] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rs_gi_pos] ON [b135_MapLink_37_3] ([snp_id] ASC,[gi] ASC,[offset] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_src] ON [b135_MapLink_37_3] ([source] ASC,[snp_type] ASC,[snp_id] ASC,[gi] ASC,[offset] ASC,[asn_to] ASC)\r
+CREATE CLUSTERED INDEX [i_rs_gi_pos] ON [b137_MapLink] ([snp_id] ASC,[gi] ASC,[offset] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_gi] ON [b135_ProteinInfo_37_3] ([gi] ASC)\r
-GO
-CREATE CLUSTERED INDEX [i_rs_pos] ON [b135_Remapped_37_3] ([snp_id] ASC,[src_gi] ASC,[src_from] ASC,[tgt_gi] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_tgt_gi] ON [b135_Remapped_37_3] ([tgt_gi] ASC,[snp_type] ASC,[snp_id] ASC)\r
+CREATE CLUSTERED INDEX [i_gi] ON [b137_MapLinkInfo] ([gi] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rs] ON [b135_SNPChrPosOnRef_37_3] ([snp_id] ASC)\r
+CREATE CLUSTERED INDEX [i_gi] ON [b137_ProteinInfo] ([gi] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rs] ON [b135_SNPContigLoc_37_3] ([snp_id] ASC,[ctg_id] ASC,[asn_from] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_ctg] ON [b135_SNPContigLoc_37_3] ([ctg_id] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_snp] ON [b135_SNPContigLoc_37_3] ([snp_type] ASC,[snp_id] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [idxAsnFrom] ON [b135_SNPContigLoc_37_3] ([asn_from] ASC)\r
-GO
-CREATE CLUSTERED INDEX [i_rsCtgMrna] ON [b135_SNPContigLocusId_37_3] ([snp_id] ASC,[contig_acc] ASC,[asn_from] ASC,[locus_id] ASC,[allele] ASC,[mrna_start] ASC,[mrna_gi] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_rs] ON [b135_SNPContigLocusId_37_3] ([snp_id] ASC)\r
+CREATE CLUSTERED INDEX [i_rs] ON [b137_SNPChrPosOnRef] ([snp_id] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rs_gi] ON [b135_SNPContigProtein_37_3] ([snp_id] ASC,[contig_gi] ASC,[contig_start] ASC)\r
+CREATE NONCLUSTERED INDEX [i_pos] ON [b137_SNPContigLoc] ([ctg_id] ASC,[asn_from] ASC,[snp_id] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rs_asm] ON [b135_SNPMapInfo_37_3] ([snp_id] ASC,[asm_acc] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_asm] ON [b135_SNPMapInfo_37_3] ([asm_acc] ASC,[asm_version] ASC)\r
+CREATE CLUSTERED INDEX [i_rsCtgMrna] ON [b137_SNPContigLocusId] ([snp_id] ASC,[contig_acc] ASC,[asn_from] ASC,[locus_id] ASC,[allele] ASC,[mrna_start] ASC,[mrna_gi] ASC)\r
GO
-CREATE NONCLUSTERED INDEX [iuc_rs_assembly_37_3] ON [b135_SNPMapInfo_37_3] ([asm_acc] ASC,[weight] ASC,[snp_id] ASC)\r
+CREATE NONCLUSTERED INDEX [i_rs] ON [b137_SNPContigLocusId] ([snp_id] ASC)\r
GO
-CREATE CLUSTERED INDEX [i_rs_pos] ON [b135_SNPMapLinkProtein_37_3] ([snp_id] ASC,[mrna_gi] ASC,[mrna_start] ASC,[mrna_stop] ASC)\r
-GO
-CREATE NONCLUSTERED INDEX [i_ctg] ON [b135_SNPMapLinkProtein_37_3] ([ctg_gi] ASC,[mrna_gi] ASC,[snp_id] ASC)\r
+
+CREATE CLUSTERED INDEX [i_rs_asm] ON [b137_SNPMapInfo] ([snp_id] ASC,[asm_acc] ASC)\r
GO
+
CREATE CLUSTERED INDEX [i_pid] ON [dn_IND_batch_pop] ([pop_id] ASC)\r
GO
CREATE INDEX ON PopMandLine (pop_id,line_num);
CREATE INDEX ON Population (handle,loc_pop_id_upp);
CREATE INDEX ON Population (handle,loc_pop_id);
-CREATE INDEX ON RsMergeArch (rsLow);
CREATE INDEX ON RsMergeArch (rsHigh);
CREATE INDEX ON SNP (snp_id);
CREATE INDEX ON SNP (exemplar_subsnp_id,snp_id);
CREATE INDEX ON SNP3D (snp_id);
+CREATE INDEX ON SNPClinSig (hgvs_g,snp_id);
CREATE INDEX ON SNPHistory (history_create_time);
CREATE INDEX ON SNPPubmed (snp_id,subsnp_id,pubmed_id,type);
CREATE INDEX ON SNPSubSNPLink (subsnp_id);
CREATE INDEX ON SubSNP (loc_snp_id_upp,subsnp_id);
CREATE INDEX ON SubSNP (batch_id,subsnp_id);
CREATE INDEX ON SubSNP (variation_id,subsnp_id);
+CREATE INDEX ON SubSNP (subsnp_id,batch_id,loc_snp_id);
CREATE INDEX ON SubSNPAcc_ins (acc_part,acc_type_ind,subsnp_id);
CREATE INDEX ON SubSNPMdFailLn (subsnp_id);
CREATE INDEX ON SubSNPPubmed (pubmed_id);
CREATE INDEX ON SubmittedIndividual (submitted_ind_id);
CREATE INDEX ON SubmittedIndividual (ind_id);
-CREATE INDEX ON b135_ContigInfo_37_3 (asm_acc,asm_version,contig_start,contig_end,chr_gi);
-CREATE INDEX ON b135_ContigInfo_37_3 (asm_acc,asm_version,chr_gi,contig_start,contig_end);
-CREATE INDEX ON b135_ContigInfo_37_3 (contig_label);
-CREATE INDEX ON b135_ContigInfo_37_3 (placement_status,ctg_id);
-CREATE INDEX ON b135_MapLinkInfo_37_3 (gi);
-CREATE INDEX ON b135_MapLink_37_3 (snp_id,gi,offset);
-CREATE INDEX ON b135_MapLink_37_3 (source,snp_type,snp_id,gi,offset,asn_to);
-CREATE INDEX ON b135_ProteinInfo_37_3 (gi);
-CREATE INDEX ON b135_Remapped_37_3 (snp_id,src_gi,src_from,tgt_gi);
-CREATE INDEX ON b135_Remapped_37_3 (tgt_gi,snp_type,snp_id);
-CREATE INDEX ON b135_SNPChrPosOnRef_37_3 (snp_id);
-CREATE INDEX ON b135_SNPContigLoc_37_3 (snp_id,ctg_id,asn_from);
-CREATE INDEX ON b135_SNPContigLoc_37_3 (ctg_id);
-CREATE INDEX ON b135_SNPContigLoc_37_3 (snp_type,snp_id);
-CREATE INDEX ON b135_SNPContigLoc_37_3 (asn_from);
-CREATE INDEX ON b135_SNPContigLocusId_37_3 (snp_id,contig_acc,asn_from,locus_id,allele,mrna_start,mrna_gi);
-CREATE INDEX ON b135_SNPContigLocusId_37_3 (snp_id);
-CREATE INDEX ON b135_SNPContigProtein_37_3 (snp_id,contig_gi,contig_start);
-CREATE INDEX ON b135_SNPMapInfo_37_3 (snp_id,asm_acc);
-CREATE INDEX ON b135_SNPMapInfo_37_3 (asm_acc,asm_version);
-CREATE INDEX ON b135_SNPMapInfo_37_3 (asm_acc,weight,snp_id);
-CREATE INDEX ON b135_SNPMapLinkProtein_37_3 (snp_id,mrna_gi,mrna_start,mrna_stop);
-CREATE INDEX ON b135_SNPMapLinkProtein_37_3 (ctg_gi,mrna_gi,snp_id);
+CREATE INDEX ON b137_ContigInfo (asm_acc,asm_version,chr_gi,contig_start,contig_end);
+CREATE INDEX ON b137_MapLink (snp_id,gi,offset);
+CREATE INDEX ON b137_MapLinkInfo (gi);
+CREATE INDEX ON b137_ProteinInfo (gi);
+CREATE INDEX ON b137_SNPChrPosOnRef (snp_id);
+CREATE INDEX ON b137_SNPContigLoc (ctg_id,asn_from,snp_id);
+CREATE INDEX ON b137_SNPContigLocusId (snp_id,contig_acc,asn_from,locus_id,allele,mrna_start,mrna_gi);
+CREATE INDEX ON b137_SNPContigLocusId (snp_id);
+CREATE INDEX ON b137_SNPMapInfo (snp_id,asm_acc);
CREATE INDEX ON dn_IND_batch_pop (pop_id);
CREATE INDEX ON dn_table_rowcount (build_id DESC,reserved_KB_spaceused DESC);
[cnt] [real] NULL ,
[freq] [real] NULL ,
[last_updated_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [Batch]
[build_id] [int] NULL ,
[tax_id] [int] NOT NULL ,
[ss_cnt] [int] NULL
-)
+)\r
GO
CREATE TABLE [BatchCita]
[citation] [varchar](255) NOT NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [BatchCommLine]
[line] [varchar](255) NOT NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [BatchCultivar]
[line] [varchar](255) NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [BatchMeExLine]
[line] [varchar](255) NOT NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [BatchStrain]
[line] [varchar](255) NOT NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [BatchValCode]
(
[batch_id] [int] NOT NULL ,
[validation_status] [tinyint] NOT NULL
-)
+)\r
GO
CREATE TABLE [ClinSigCode]
[abbrev] [varchar](64) NULL ,
[descrip] [varchar](255) NULL ,
[create_time] [smalldatetime] NULL ,
-[last_updated_time] [smalldatetime] NULL
-)
+[last_updated_time] [smalldatetime] NULL ,
+[severity_level] [tinyint] NOT NULL
+)\r
GO
CREATE TABLE [Contact]
[address] [varchar](255) NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [FreqSummaryBySsPop]
[het] [int] NULL ,
[het_se] [int] NULL ,
[last_updated_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [GeneIdToName]
[ref_tax_id] [int] NOT NULL ,
[dbSNP_tax_id] [int] NOT NULL ,
[ins_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [GtyFreqBySsPop]
[cnt] [real] NULL ,
[freq] [real] NULL ,
[last_updated_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [IndGrpCode]
[code] [tinyint] NOT NULL ,
[name] [varchar](32) NOT NULL ,
[descrip] [varchar](255) NOT NULL
-)
+)\r
GO
CREATE TABLE [IndivBySource]
[src_ind_id] [varchar](64) NOT NULL ,
[create_time] [smalldatetime] NOT NULL ,
[src_ind_grp] [varchar](64) NULL
-)
+)\r
GO
CREATE TABLE [IndivSourceCode]
[create_time] [smalldatetime] NOT NULL ,
[src_type] [varchar](10) NULL ,
[display_order] [tinyint] NULL
-)
+)\r
GO
CREATE TABLE [Individual]
[create_time] [smalldatetime] NOT NULL ,
[tax_id] [int] NULL ,
[ind_grp] [tinyint] NULL
-)
+)\r
GO
CREATE TABLE [OmimVarLocusIdSNP]
[var2] [char](20) NULL ,
[var_class] [int] NOT NULL ,
[snp_id] [int] NOT NULL
-)
+)\r
GO
CREATE TABLE [Pedigree]
[curator] [varchar](12) NOT NULL ,
[curator_ped_id] [varchar](12) NOT NULL ,
[create_time] [smalldatetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [PedigreeIndividual]
[pa_ind_id] [int] NULL ,
[sex] [char](1) NULL ,
[create_time] [smalldatetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [PopLine]
[line] [varchar](255) NOT NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [PopMandLine]
[line] [varchar](255) NOT NULL ,
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [Population]
[create_time] [smalldatetime] NULL ,
[last_updated_time] [smalldatetime] NULL ,
[src_id] [int] NULL
-)
+)\r
GO
CREATE TABLE [RsMergeArch]
[rsCurrent] [int] NULL ,
[orien2Current] [tinyint] NULL ,
[comment] [varchar](255) NULL
-)
+)\r
GO
CREATE TABLE [SNP]
[CpG_code] [tinyint] NULL ,
[tax_id] [int] NULL ,
[validation_status] [tinyint] NULL ,
-[exemplar_subsnp_id] [int] NULL ,
+[exemplar_subsnp_id] [int] NOT NULL ,
[univar_id] [int] NULL ,
[cnt_subsnp] [int] NULL ,
[map_property] [tinyint] NULL
-)
+)\r
GO
CREATE TABLE [SNP3D]
[neighbor_pos] [int] NOT NULL ,
[var_color] [int] NOT NULL ,
[var_label] [int] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNPAlleleFreq]
[chr_cnt] [float] NULL ,
[freq] [float] NULL ,
[last_updated_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNPAlleleFreq_TGP]
(
-[snp_id] [int] NOT NULL ,
+[snp_id] [int] NULL ,
[allele_id] [int] NOT NULL ,
-[freq] [float] NULL ,
-[count] [int] NULL ,
-[is_minor_allele] [bit] NULL
-)
+[freq] [float] NOT NULL ,
+[count] [int] NOT NULL ,
+[is_minor_allele] [int] NOT NULL
+)\r
GO
CREATE TABLE [SNPAncestralAllele]
[snp_id] [int] NOT NULL ,
[ancestral_allele_id] [int] NOT NULL ,
[batch_id] [int] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNPClinSig]
(
-[snp_id] [int] NOT NULL ,
-[clin_sig_id] [int] NULL ,
-[upd_time] [smalldatetime] NULL ,
-[clin_test_code] [varchar](16) NULL
-)
+[hgvs_g] [varchar](255) NULL ,
+[snp_id] [int] NULL ,
+[tested] [char](1) NULL ,
+[clin_sig_id] [int] NOT NULL ,
+[upd_time] [datetime] NOT NULL ,
+[clin_sig_id_by_rs] [int] NOT NULL
+)\r
GO
CREATE TABLE [SNPGtyFreq]
[ind_cnt] [float] NULL ,
[freq] [float] NULL ,
[last_updated_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNPHWProb]
[hwp] [real] NULL ,
[ind_cnt] [smallint] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [SNPHistory]
[history_create_time] [smalldatetime] NULL ,
[comment] [varchar](255) NULL ,
[reactivated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [SNPPubmed]
(
[snp_id] [int] NULL ,
-[subsnp_id] [int] NOT NULL ,
+[subsnp_id] [int] NULL ,
[pubmed_id] [int] NULL ,
-[type] [varchar](9) NOT NULL ,
+[type] [varchar](16) NULL ,
[score] [int] NOT NULL ,
[upd_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNPSubSNPLink]
[last_updated_time] [datetime] NULL ,
[build_id] [int] NULL ,
[comment] [varchar](255) NULL
-)
+)\r
GO
CREATE TABLE [SNPSubSNPLinkHistory]
[orien] [tinyint] NULL ,
[build_id_when_history_made] [int] NULL ,
[comment] [varchar](255) NULL
-)
+)\r
GO
CREATE TABLE [SNPSuspect]
[snp_id] [int] NOT NULL ,
[reason_code] [int] NULL ,
[upd_time] [smalldatetime] NULL
-)
+)\r
GO
-CREATE TABLE [dbo].[SuspectReasonCode](
- [code] [int] NOT NULL,
- [abbrev] [varchar](64) NULL,
- [descrip] [varchar](255) NULL,
- [create_time] [smalldatetime] NULL,
- [last_update_time] [smalldatetime] NULL,
-PRIMARY KEY CLUSTERED
-(
- [code] ASC
-)WITH (PAD_INDEX = OFF, STATISTICS_NORECOMPUTE = OFF, IGNORE_DUP_KEY = OFF, ALLOW_ROW_LOCKS = ON, ALLOW_PAGE_LOCKS = ON) ON [PRIMARY]
-) ON [PRIMARY]
-
CREATE TABLE [SNPVal]
(
[batch_id] [int] NOT NULL ,
[snp_id] [int] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNP_HGVS]
[hgvs_name] [varchar](4000) NULL ,
[source] [varchar](3) NOT NULL ,
[upd_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [SNP_bitfield]
[quality_check] [tinyint] NULL ,
[upd_time] [datetime] NOT NULL ,
[encoding] [binary] NULL
-)
+)\r
GO
CREATE TABLE [SubPop]
[observed] [varchar](1000) NULL ,
[sub_het_se_sq] [real] NULL ,
[subpop_id] [int] IDENTITY(1,1) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubPopAllele]
[cnt] [real] NULL ,
[allele_id] [int] NULL ,
[subpop_id] [int] NOT NULL
-)
+)\r
GO
CREATE TABLE [SubPopGty]
[cnt] [real] NULL ,
[freq] [real] NULL ,
[last_updated_time] [smalldatetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNP]
[snp_id] [int] NULL ,
[tax_id] [int] NOT NULL ,
[chr_id] [tinyint] NULL
-)
+)\r
GO
CREATE TABLE [SubSNPAcc_ins]
[acc_type_ind] [char](1) NOT NULL ,
[acc_part] [varchar](16) NOT NULL ,
[acc_ver] [int] NULL
-)
+)\r
GO
CREATE TABLE [SubSNPCommLine_ins]
[subsnp_id] [int] NOT NULL ,
[line_num] [tinyint] NOT NULL ,
[line] [varchar](255) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNPHGVS]
(
[subsnp_id] [int] NOT NULL ,
-[sub_hgvs_c] [varchar](32) NULL ,
-[sub_hgvs_g] [varchar](64) NULL ,
-[sub_hgvs_p] [varchar](32) NULL ,
-[cal_hgvs_c] [varchar](32) NULL ,
-[cal_hgvs_g] [varchar](32) NULL ,
-[cal_hgvs_p] [varchar](32) NULL ,
+[sub_hgvs_c] [varchar](255) NULL ,
+[sub_hgvs_g] [varchar](255) NULL ,
+[sub_hgvs_p] [varchar](255) NULL ,
+[cal_hgvs_c] [varchar](255) NULL ,
+[cal_hgvs_g] [varchar](255) NULL ,
+[cal_hgvs_p] [varchar](255) NULL ,
[upd_time] [smalldatetime] NULL ,
[gene_id] [int] NULL
-)
+)\r
GO
CREATE TABLE [SubSNPLinkout]
[url_val] [varchar](255) NOT NULL ,
[updated_time] [smalldatetime] NULL ,
[link_type] [varchar](3) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNPMdFailLn]
[subsnp_id] [int] NOT NULL ,
[line_num] [tinyint] NOT NULL ,
[line] [varchar](255) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNPNoVariSeq]
[subsnp_id] [int] NOT NULL ,
[line_num] [tinyint] NOT NULL ,
[line] [varchar](255) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNPOmim]
(
[subsnp_id] [int] NOT NULL ,
-[omim_id] [int] NOT NULL ,
+[omim_id] [varchar](128) NOT NULL ,
[allele_variant_id] [varchar](32) NULL ,
[update_time] [smalldatetime] NULL ,
[mutObsCount] [int] NULL
-)
+)\r
GO
CREATE TABLE [SubSNPPubmed]
[line_num] [int] NOT NULL ,
[pubmed_id] [int] NOT NULL ,
[updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [SubSNPSeq3_ins]
[type] [tinyint] NOT NULL ,
[line_num] [tinyint] NOT NULL ,
[line] [varchar](255) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNPSeq5_ins]
[type] [tinyint] NOT NULL ,
[line_num] [tinyint] NOT NULL ,
[line] [varchar](255) NOT NULL
-)
+)\r
GO
CREATE TABLE [SubSNPSeqPos]
[downstream_len] [int] NOT NULL ,
[last_update_time] [smalldatetime] NOT NULL ,
[mrna_acc] [varchar](24) NULL
-)
+)\r
GO
CREATE TABLE [SubSNP_top_or_bot]
[top_or_bot] [char](1) NULL ,
[step] [tinyint] NULL ,
[last_updated_time] [smalldatetime] NULL
-)
+)\r
GO
CREATE TABLE [SubmittedIndividual]
[loc_ind_id] [varchar](64) NULL ,
[loc_ind_grp] [varchar](64) NULL ,
[ploidy] [tinyint] NULL
-)
+)\r
+GO
+
+CREATE TABLE [SuspectReasonCode]
+(
+[code] [int] NOT NULL ,
+[abbrev] [varchar](64) NULL ,
+[descrip] [varchar](255) NULL ,
+[create_time] [smalldatetime] NULL ,
+[last_update_time] [smalldatetime] NULL
+)\r
GO
CREATE TABLE [Synonym]
[subsnp_id] [int] NOT NULL ,
[type] [varchar](64) NOT NULL ,
[name] [varchar](64) NULL
-)
+)\r
GO
-CREATE TABLE [b135_ContigInfo_37_3]
+CREATE TABLE [b137_ContigInfo]
(
[ctg_id] [int] NOT NULL ,
[tax_id] [int] NOT NULL ,
[contig_acc] [varchar](32) NOT NULL ,
-[contig_ver] [tinyint] NOT NULL ,
+[contig_ver] [smallint] NOT NULL ,
[contig_name] [varchar](63) NULL ,
[contig_chr] [varchar](32) NULL ,
[contig_start] [int] NULL ,
[group_term] [varchar](32) NULL ,
[group_label] [varchar](32) NULL ,
[contig_label] [varchar](32) NULL ,
+[primary_fl] [tinyint] NOT NULL ,
+[genbank_gi] [int] NULL ,
+[genbank_acc] [varchar](32) NULL ,
+[genbank_ver] [smallint] NULL ,
[build_id] [int] NOT NULL ,
[build_ver] [int] NOT NULL ,
[last_updated_time] [datetime] NOT NULL ,
[par_fl] [tinyint] NULL ,
[top_level_fl] [tinyint] NOT NULL ,
[gen_rgn] [varchar](32) NULL
-)
+)\r
GO
-CREATE TABLE [b135_MapLinkHGVS_37_3]
+CREATE TABLE [b137_MapLink]
(
[snp_type] [char](2) NOT NULL ,
[snp_id] [int] NULL ,
[gi] [int] NULL ,
-[accession_how_cd] [int] NOT NULL ,
+[accession_how_cd] [int] NULL ,
[offset] [int] NULL ,
[asn_to] [int] NULL ,
[lf_ngbr] [int] NULL ,
[rf_ngbr] [int] NULL ,
[lc_ngbr] [int] NULL ,
[rc_ngbr] [int] NULL ,
-[loc_type] [tinyint] NULL ,
+[loc_type] [tinyint] NOT NULL ,
[build_id] [int] NULL ,
-[process_time] [smalldatetime] NULL ,
+[process_time] [smalldatetime] NOT NULL ,
[process_status] [int] NOT NULL ,
[orientation] [tinyint] NULL ,
-[allele] [varchar](255) NULL ,
+[allele] [varchar](1024) NULL ,
[aln_quality] [real] NULL ,
[num_mism] [int] NULL ,
-[num_del] [int] NULL ,
[num_ins] [int] NULL ,
+[num_del] [int] NULL ,
[tier] [tinyint] NULL ,
[ctg_gi] [int] NULL ,
[ctg_from] [int] NULL ,
[ctg_to] [int] NULL ,
-[ctg_orient] [tinyint] NULL
-)
-GO
-
-CREATE TABLE [b135_MapLinkInfo_37_3]
-(
-[gi] [int] NOT NULL ,
-[accession] [varchar](32) NOT NULL ,
-[accession_ver] [smallint] NOT NULL ,
-[acc] [varchar](32) NOT NULL ,
-[version] [smallint] NOT NULL ,
-[status] [varchar](32) NULL ,
-[create_dt] [smalldatetime] NULL ,
-[update_dt] [smalldatetime] NULL ,
-[cds_from] [int] NULL ,
-[cds_to] [int] NULL
-)
+[ctg_orient] [tinyint] NULL ,
+[source] [varchar](5) NOT NULL
+)\r
GO
-CREATE TABLE [b135_MapLink_37_3]
+CREATE TABLE [b137_MapLinkHGVS]
(
[snp_type] [char](2) NOT NULL ,
[snp_id] [int] NULL ,
[gi] [int] NULL ,
-[accession_how_cd] [int] NULL ,
+[accession_how_cd] [int] NOT NULL ,
[offset] [int] NULL ,
[asn_to] [int] NULL ,
[lf_ngbr] [int] NULL ,
[rf_ngbr] [int] NULL ,
[lc_ngbr] [int] NULL ,
[rc_ngbr] [int] NULL ,
-[loc_type] [tinyint] NOT NULL ,
+[loc_type] [tinyint] NULL ,
[build_id] [int] NULL ,
-[process_time] [smalldatetime] NOT NULL ,
+[process_time] [smalldatetime] NULL ,
[process_status] [int] NOT NULL ,
[orientation] [tinyint] NULL ,
-[allele] [varchar](1024) NULL ,
+[allele] [varchar](255) NULL ,
[aln_quality] [real] NULL ,
[num_mism] [int] NULL ,
-[num_ins] [int] NULL ,
[num_del] [int] NULL ,
+[num_ins] [int] NULL ,
[tier] [tinyint] NULL ,
[ctg_gi] [int] NULL ,
[ctg_from] [int] NULL ,
[ctg_to] [int] NULL ,
-[ctg_orient] [tinyint] NULL ,
-[source] [varchar](5) NOT NULL
-)
+[ctg_orient] [tinyint] NULL
+)\r
+GO
+
+CREATE TABLE [b137_MapLinkInfo]
+(
+[gi] [int] NOT NULL ,
+[accession] [varchar](32) NOT NULL ,
+[accession_ver] [smallint] NOT NULL ,
+[acc] [varchar](32) NOT NULL ,
+[version] [smallint] NOT NULL ,
+[status] [varchar](32) NULL ,
+[create_dt] [smalldatetime] NULL ,
+[update_dt] [smalldatetime] NULL ,
+[cds_from] [int] NULL ,
+[cds_to] [int] NULL
+)\r
GO
-CREATE TABLE [b135_ProteinInfo_37_3]
+CREATE TABLE [b137_ProteinInfo]
(
[gi] [int] NOT NULL ,
[acc] [varchar](32) NOT NULL ,
[status] [varchar](32) NULL ,
[create_dt] [smalldatetime] NULL ,
[update_dt] [smalldatetime] NULL
-)
+)\r
GO
-CREATE TABLE [b135_Remapped_37_3]
+CREATE TABLE [b137_Remapped]
(
[snp_type] [char](2) NOT NULL ,
[snp_id] [int] NULL ,
[tgt_aln_quality] [real] NULL ,
[last_updated_time] [smalldatetime] NOT NULL ,
[comment] [varchar](255) NULL
-)
+)\r
GO
-CREATE TABLE [b135_SNPChrPosOnRef_37_3]
+CREATE TABLE [b137_SNPChrPosOnRef]
(
[snp_id] [int] NOT NULL ,
[chr] [varchar](32) NOT NULL ,
[orien] [int] NULL ,
[neighbor_snp_list] [int] NULL ,
[isPAR] [varchar](1) NOT NULL
-)
+)\r
GO
-CREATE TABLE [b135_SNPContigLoc_37_3]
+CREATE TABLE [b137_SNPContigLoc]
(
[snp_type] [char](2) NOT NULL ,
[snp_id] [int] NOT NULL ,
[num_del] [int] NULL ,
[num_ins] [int] NULL ,
[tier] [tinyint] NULL
-)
+)\r
GO
-CREATE TABLE [b135_SNPContigLocusId_37_3]
+CREATE TABLE [b137_SNPContigLocusId]
(
-[snp_id] [int] NOT NULL ,
-[contig_acc] [varchar](32) NULL ,
+[snp_id] [int] NULL ,
+[contig_acc] [varchar](32) NOT NULL ,
[contig_ver] [tinyint] NULL ,
[asn_from] [int] NULL ,
[asn_to] [int] NULL ,
[locus_id] [int] NULL ,
-[locus_symbol] [varchar](128) NULL ,
+[locus_symbol] [varchar](64) NULL ,
[mrna_acc] [varchar](32) NOT NULL ,
[mrna_ver] [smallint] NOT NULL ,
[protein_acc] [varchar](32) NULL ,
[protein_ver] [smallint] NULL ,
-[fxn_class] [int] NOT NULL ,
+[fxn_class] [int] NULL ,
[reading_frame] [int] NULL ,
-[allele] [varchar](256) NULL ,
-[residue] [varchar](1024) NULL ,
+[allele] [varchar](255) NULL ,
+[residue] [varchar](1000) NULL ,
[aa_position] [int] NULL ,
[build_id] [varchar](4) NOT NULL ,
[ctg_id] [int] NULL ,
[mrna_start] [int] NULL ,
[mrna_stop] [int] NULL ,
-[codon] [varchar](1024) NULL ,
+[codon] [varchar](1000) NULL ,
[protRes] [char](3) NULL ,
[contig_gi] [int] NULL ,
-[mrna_gi] [int] NOT NULL ,
+[mrna_gi] [int] NULL ,
[mrna_orien] [tinyint] NULL ,
-[cp_mrna_ver] [smallint] NULL ,
+[cp_mrna_ver] [int] NULL ,
[cp_mrna_gi] [int] NULL ,
-[verComp] [varchar](7) NULL
-)
+[verComp] [int] NULL
+)\r
GO
-CREATE TABLE [b135_SNPContigProtein_37_3]
+CREATE TABLE [b137_SNPContigProtein]
(
[snp_id] [int] NOT NULL ,
[contig_gi] [int] NOT NULL ,
[codon] [varchar](1024) NULL ,
[fxn_class] [int] NOT NULL ,
[in_stop_codon] [tinyint] NULL
-)
+)\r
GO
-CREATE TABLE [b135_SNPMapInfo_37_3]
+CREATE TABLE [b137_SNPMapInfo]
(
[snp_type] [char](2) NOT NULL ,
[snp_id] [int] NOT NULL ,
[asm_acc] [varchar](32) NULL ,
[asm_version] [smallint] NULL ,
[assembly] [varchar](32) NULL
-)
+)\r
GO
-CREATE TABLE [b135_SNPMapLinkProtein_37_3]
+CREATE TABLE [b137_SNPMapLinkProtein]
(
[snp_id] [int] NOT NULL ,
[mrna_acc] [varchar](32) NOT NULL ,
[ctg_to] [int] NULL ,
[ctg_orientation] [tinyint] NULL ,
[source] [varchar](7) NULL
-)
+)\r
GO
CREATE TABLE [dn_IND_batchCount]
[rs_cnt] [int] NOT NULL ,
[ind_cnt] [int] NOT NULL ,
[create_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [dn_IND_batch_pop]
[batch_id] [smallint] NOT NULL ,
[pop_id] [int] NOT NULL ,
[update_time] [datetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [dn_PopulationIndGrp]
[pop_id] [int] NOT NULL ,
[ind_grp_name] [varchar](32) NOT NULL ,
[ind_grp_code] [tinyint] NOT NULL
-)
+)\r
GO
CREATE TABLE [dn_batchCount]
[create_time] [smalldatetime] NOT NULL ,
[pop_cnt] [int] NULL ,
[ind_cnt] [int] NULL
-)
+)\r
GO
CREATE TABLE [dn_handleCount]
[rs_cnt] [int] NULL ,
[rs_validated_cnt] [int] NULL ,
[create_time] [smalldatetime] NOT NULL
-)
+)\r
GO
CREATE TABLE [dn_snpFxnCnt]
[create_time] [smalldatetime] NOT NULL ,
[last_updated_time] [smalldatetime] NOT NULL ,
[tax_id] [int] NOT NULL
-)
+)\r
GO
CREATE TABLE [dn_table_rowcount]
[data_KB_spaceused] [int] NULL ,
[index_size_KB_spaceused] [int] NULL ,
[unused_KB_spaceused] [int] NULL
-)
+)\r
GO
abbrev varchar(64) NULL ,
descrip varchar(255) NULL ,
create_time TIMESTAMP NULL ,
-last_updated_time TIMESTAMP NULL
+last_updated_time TIMESTAMP NULL ,
+severity_level smallint NOT NULL
);
CREATE TABLE Contact
(
CpG_code smallint NULL ,
tax_id int NULL ,
validation_status smallint NULL ,
-exemplar_subsnp_id int NULL ,
+exemplar_subsnp_id int NOT NULL ,
univar_id int NULL ,
cnt_subsnp int NULL ,
map_property smallint NULL
);
CREATE TABLE SNPAlleleFreq_TGP
(
-snp_id int NOT NULL ,
+snp_id int NULL ,
allele_id int NOT NULL ,
-freq float NULL ,
-count int NULL ,
-is_minor_allele bit NULL
+freq float NOT NULL ,
+count int NOT NULL ,
+is_minor_allele int NOT NULL
);
CREATE TABLE SNPAncestralAllele
(
);
CREATE TABLE SNPClinSig
(
-snp_id int NOT NULL ,
-clin_sig_id int NULL ,
-upd_time TIMESTAMP NULL ,
-clin_test_code varchar(16) NULL
+hgvs_g varchar(255) NULL ,
+snp_id int NULL ,
+tested char(1) NULL ,
+clin_sig_id int NOT NULL ,
+upd_time TIMESTAMP NOT NULL ,
+clin_sig_id_by_rs int NOT NULL
);
CREATE TABLE SNPGtyFreq
(
CREATE TABLE SNPPubmed
(
snp_id int NULL ,
-subsnp_id int NOT NULL ,
+subsnp_id int NULL ,
pubmed_id int NULL ,
-type varchar(9) NOT NULL ,
+type varchar(16) NULL ,
score int NOT NULL ,
upd_time TIMESTAMP NOT NULL
);
reason_code int NULL ,
upd_time TIMESTAMP NULL
);
-CREATE TABLE SuspectReasonCode(
- code int NOT NULL,
- abbrev varchar(64) NULL,
- descrip varchar(255) NULL,
- create_time TIMESTAMP NULL,
- last_update_time TIMESTAMP NULL,
-PRIMARY KEY (code));
CREATE TABLE SNPVal
(
batch_id int NOT NULL ,
CREATE TABLE SubSNPHGVS
(
subsnp_id int NOT NULL ,
-sub_hgvs_c varchar(32) NULL ,
-sub_hgvs_g varchar(64) NULL ,
-sub_hgvs_p varchar(32) NULL ,
-cal_hgvs_c varchar(32) NULL ,
-cal_hgvs_g varchar(32) NULL ,
-cal_hgvs_p varchar(32) NULL ,
+sub_hgvs_c varchar(255) NULL ,
+sub_hgvs_g varchar(255) NULL ,
+sub_hgvs_p varchar(255) NULL ,
+cal_hgvs_c varchar(255) NULL ,
+cal_hgvs_g varchar(255) NULL ,
+cal_hgvs_p varchar(255) NULL ,
upd_time TIMESTAMP NULL ,
gene_id int NULL
);
CREATE TABLE SubSNPOmim
(
subsnp_id int NOT NULL ,
-omim_id int NOT NULL ,
+omim_id varchar(128) NOT NULL ,
allele_variant_id varchar(32) NULL ,
update_time TIMESTAMP NULL ,
mutObsCount int NULL
loc_ind_grp varchar(64) NULL ,
ploidy smallint NULL
);
+CREATE TABLE SuspectReasonCode
+(
+code int NOT NULL ,
+abbrev varchar(64) NULL ,
+descrip varchar(255) NULL ,
+create_time TIMESTAMP NULL ,
+last_update_time TIMESTAMP NULL
+);
CREATE TABLE Synonym
(
subsnp_id int NOT NULL ,
type varchar(64) NOT NULL ,
name varchar(64) NULL
);
-CREATE TABLE b135_ContigInfo_37_3
+CREATE TABLE b137_ContigInfo
(
ctg_id int NOT NULL ,
tax_id int NOT NULL ,
group_term varchar(32) NULL ,
group_label varchar(32) NULL ,
contig_label varchar(32) NULL ,
+primary_fl smallint NOT NULL ,
+genbank_gi int NULL ,
+genbank_acc varchar(32) NULL ,
+genbank_ver smallint NULL ,
build_id int NOT NULL ,
build_ver int NOT NULL ,
last_updated_time TIMESTAMP NOT NULL ,
top_level_fl smallint NOT NULL ,
gen_rgn varchar(32) NULL
);
-CREATE TABLE b135_MapLinkHGVS_37_3
+CREATE TABLE b137_MapLink
(
snp_type char(2) NOT NULL ,
snp_id int NULL ,
gi int NULL ,
-accession_how_cd int NOT NULL ,
-offset_ int NULL ,
+accession_how_cd int NULL ,
+offset int NULL ,
asn_to int NULL ,
lf_ngbr int NULL ,
rf_ngbr int NULL ,
lc_ngbr int NULL ,
rc_ngbr int NULL ,
-loc_type smallint NULL ,
+loc_type smallint NOT NULL ,
build_id int NULL ,
-process_time TIMESTAMP NULL ,
+process_time TIMESTAMP NOT NULL ,
process_status int NOT NULL ,
orientation smallint NULL ,
-allele varchar(255) NULL ,
+allele varchar(1024) NULL ,
aln_quality real NULL ,
num_mism int NULL ,
-num_del int NULL ,
num_ins int NULL ,
+num_del int NULL ,
tier smallint NULL ,
ctg_gi int NULL ,
ctg_from int NULL ,
ctg_to int NULL ,
-ctg_orient smallint NULL
-);
-CREATE TABLE b135_MapLinkInfo_37_3
-(
-gi int NOT NULL ,
-accession varchar(32) NOT NULL ,
-accession_ver smallint NOT NULL ,
-acc varchar(32) NOT NULL ,
-version smallint NOT NULL ,
-status varchar(32) NULL ,
-create_dt TIMESTAMP NULL ,
-update_dt TIMESTAMP NULL ,
-cds_from int NULL ,
-cds_to int NULL
+ctg_orient smallint NULL ,
+source varchar(5) NOT NULL
);
-CREATE TABLE b135_MapLink_37_3
+CREATE TABLE b137_MapLinkHGVS
(
snp_type char(2) NOT NULL ,
snp_id int NULL ,
gi int NULL ,
-accession_how_cd int NULL ,
-offset_ int NULL ,
+accession_how_cd int NOT NULL ,
+offset int NULL ,
asn_to int NULL ,
lf_ngbr int NULL ,
rf_ngbr int NULL ,
lc_ngbr int NULL ,
rc_ngbr int NULL ,
-loc_type smallint NOT NULL ,
+loc_type smallint NULL ,
build_id int NULL ,
-process_time TIMESTAMP NOT NULL ,
+process_time TIMESTAMP NULL ,
process_status int NOT NULL ,
orientation smallint NULL ,
-allele varchar(1024) NULL ,
+allele varchar(255) NULL ,
aln_quality real NULL ,
num_mism int NULL ,
-num_ins int NULL ,
num_del int NULL ,
+num_ins int NULL ,
tier smallint NULL ,
ctg_gi int NULL ,
ctg_from int NULL ,
ctg_to int NULL ,
-ctg_orient smallint NULL ,
-source varchar(5) NOT NULL
+ctg_orient smallint NULL
+);
+CREATE TABLE b137_MapLinkInfo
+(
+gi int NOT NULL ,
+accession varchar(32) NOT NULL ,
+accession_ver smallint NOT NULL ,
+acc varchar(32) NOT NULL ,
+version smallint NOT NULL ,
+status varchar(32) NULL ,
+create_dt TIMESTAMP NULL ,
+update_dt TIMESTAMP NULL ,
+cds_from int NULL ,
+cds_to int NULL
);
-CREATE TABLE b135_ProteinInfo_37_3
+CREATE TABLE b137_ProteinInfo
(
gi int NOT NULL ,
acc varchar(32) NOT NULL ,
create_dt TIMESTAMP NULL ,
update_dt TIMESTAMP NULL
);
-CREATE TABLE b135_Remapped_37_3
+CREATE TABLE b137_Remapped
(
snp_type char(2) NOT NULL ,
snp_id int NULL ,
last_updated_time TIMESTAMP NOT NULL ,
comment varchar(255) NULL
);
-CREATE TABLE b135_SNPChrPosOnRef_37_3
+CREATE TABLE b137_SNPChrPosOnRef
(
snp_id int NOT NULL ,
chr varchar(32) NOT NULL ,
neighbor_snp_list int NULL ,
isPAR varchar(1) NOT NULL
);
-CREATE TABLE b135_SNPContigLoc_37_3
+CREATE TABLE b137_SNPContigLoc
(
snp_type char(2) NOT NULL ,
snp_id int NOT NULL ,
num_ins int NULL ,
tier smallint NULL
);
-CREATE TABLE b135_SNPContigLocusId_37_3
+CREATE TABLE b137_SNPContigLocusId
(
-snp_id int NOT NULL ,
-contig_acc varchar(32) NULL ,
+snp_id int NULL ,
+contig_acc varchar(32) NOT NULL ,
contig_ver smallint NULL ,
asn_from int NULL ,
asn_to int NULL ,
locus_id int NULL ,
-locus_symbol varchar(128) NULL ,
+locus_symbol varchar(64) NULL ,
mrna_acc varchar(32) NOT NULL ,
mrna_ver smallint NOT NULL ,
protein_acc varchar(32) NULL ,
protein_ver smallint NULL ,
-fxn_class int NOT NULL ,
+fxn_class int NULL ,
reading_frame int NULL ,
-allele varchar(256) NULL ,
-residue varchar(1024) NULL ,
+allele varchar(255) NULL ,
+residue varchar(1000) NULL ,
aa_position int NULL ,
build_id varchar(4) NOT NULL ,
ctg_id int NULL ,
mrna_start int NULL ,
mrna_stop int NULL ,
-codon varchar(1024) NULL ,
+codon varchar(1000) NULL ,
protRes char(3) NULL ,
contig_gi int NULL ,
-mrna_gi int NOT NULL ,
+mrna_gi int NULL ,
mrna_orien smallint NULL ,
-cp_mrna_ver smallint NULL ,
+cp_mrna_ver int NULL ,
cp_mrna_gi int NULL ,
-verComp varchar(7) NULL
+verComp int NULL
);
-CREATE TABLE b135_SNPContigProtein_37_3
+CREATE TABLE b137_SNPContigProtein
(
snp_id int NOT NULL ,
contig_gi int NOT NULL ,
fxn_class int NOT NULL ,
in_stop_codon smallint NULL
);
-CREATE TABLE b135_SNPMapInfo_37_3
+CREATE TABLE b137_SNPMapInfo
(
snp_type char(2) NOT NULL ,
snp_id int NOT NULL ,
asm_version smallint NULL ,
assembly varchar(32) NULL
);
-CREATE TABLE b135_SNPMapLinkProtein_37_3
+CREATE TABLE b137_SNPMapLinkProtein
(
snp_id int NOT NULL ,
mrna_acc varchar(32) NOT NULL ,
projects / dbsnp.git / commitdiff