get_dependencies <- function(pkg,extra_deps) { # determine dependencies dependencies <- r_dependencies_of(description=pkg$description) depends <- list() # these are used for generating the Depends fields as_deb <- function(r,build) { return(pkgname_as_debian(paste(dependencies[r,]$name) ,version=dependencies[r,]$version ,repopref=pkg$repo ,build=build)) } depends$bin <- lapply(rownames(dependencies), as_deb, build=F) depends$build <- lapply(rownames(dependencies), as_deb, build=T) # add the command line dependencies depends$bin = c(extra_deps$deb,depends$bin) depends$build = c(extra_deps$deb,depends$build) # add the system requirements if ('SystemRequirements' %in% colnames(pkg$description)) { sysreq <- sysreqs_as_debian(pkg$description[1,'SystemRequirements']) depends$bin = c(sysreq$bin,depends$bin) depends$build = c(sysreq$build,depends$build) } forced <- forced_deps_as_debian(pkg$name) if (length(forced)) { notice('forced build dependencies:',paste(forced$build, collapse=', ')) notice('forced binary dependencies:',paste(forced$bin, collapse=', ')) depends$bin = c(forced$bin,depends$bin) depends$build = c(forced$build,depends$build) } # make sure we depend upon R in some way... if (!length(grep('^r-base',depends$build))) { depends$build = c(depends$build,pkgname_as_debian('R',version='>= 2.7.0',build=T)) depends$bin = c(depends$bin, pkgname_as_debian('R',version='>= 2.7.0',build=F)) } # also include stuff to allow tcltk to build (suggested by Dirk) depends$build = c(depends$build,'xvfb','xauth','xfonts-base') # make all bin dependencies build dependencies. depends$build = c(depends$build, depends$bin) # remove duplicates depends <- lapply(depends,unique) # append the Debian dependencies depends$build=c(depends$build,'debhelper (>> 4.1.0)','cdbs') if (file.exists(file.path(patch_dir, pkg$name))) { depends$build <- c(depends$build,'dpatch') } if (pkg$archdep) { depends$bin=c(depends$bin,'${shlibs:Depends}') } # the names of dependent source packages (to find the .changes file to # upload via dput). these can be found recursively. depends$r = r_dependency_closure(dependencies) # append command line dependencies depends$r = c(extra_deps$r, depends$r) return(depends) } sysreqs_as_debian <- function(sysreq_text) { # form of this field is unspecified (ugh) but most people seem to stick # with this aliases <- c() sysreq_text <- gsub('[[:space:]]and[[:space:]]',' , ',tolower(sysreq_text)) for (sysreq in strsplit(sysreq_text,'[[:space:]]*,[[:space:]]*')[[1]]) { startreq = sysreq # constant case sysreq = tolower(sysreq) # drop version information/comments for now sysreq = gsub('[[][^])]*[]]','',sysreq) sysreq = gsub('\\([^)]*\\)','',sysreq) sysreq = gsub('[[][^])]*[]]','',sysreq) sysreq = gsub('version','',sysreq) sysreq = gsub('from','',sysreq) sysreq = gsub('[<>=]*[[:space:]]*[[:digit:]]+[[:digit:].+:~-]*','',sysreq) # byebye URLs sysreq = gsub('(ht|f)tps?://[[:alnum:]!?*"\'(),%$_@.&+/=-]*','',sysreq) # squish out space sysreq = chomp(gsub('[[:space:]]+',' ',sysreq)) alias <- db_sysreq_override(sysreq) if (is.null(alias)) { error('do not know what to do with SystemRequirement:',sysreq) error('original SystemRequirement:',startreq) fail('unmet system requirement') } notice('mapped SystemRequirement',startreq,'onto',alias,'via',sysreq) aliases = c(aliases,alias) } return(map_aliases_to_debian(aliases)) } forced_deps_as_debian <- function(r_name) { aliases <- db_get_forced_depends(r_name) return(map_aliases_to_debian(aliases)) } map_aliases_to_debian <- function(aliases) { if (!length(aliases)) { return(aliases) } debs <- list() debs$bin = unlist(sapply(aliases, db_get_depends)) debs$build = unlist(sapply(aliases, db_get_depends, build=T)) debs$bin = debs$bin[debs$bin != 'build-essential'] debs$build = debs$build[debs$build != 'build-essential'] return(debs) } generate_control <- function(pkg) { # construct control file control = data.frame() control[1,'Source'] = pkg$srcname control[1,'Section'] = 'math' ## to be changed to 'gnu-r' once lintian groks it control[1,'Priority'] = 'optional' control[1,'Maintainer'] = maintainer control[1,'Build-Depends'] = paste(pkg$depends$build,collapse=', ') control[1,'Standards-Version'] = '3.8.0' control[2,'Package'] = pkg$debname control[2,'Architecture'] = 'all' if (pkg$archdep) { control[2,'Architecture'] = 'any' } control[2,'Depends'] = paste(pkg$depends$bin,collapse=', ') # # bundles provide virtual packages of their contents # # unnecessary for now; cran2deb converts R bundles itself # if (pkg$is_bundle) { # control[2,'Provides'] = paste( # lapply(r_bundle_contains(pkg$name) # ,function(name) return(pkgname_as_debian(paste(name) # ,repopref=pkg$repo))) # ,collapse=', ') # } # generate the description descr = 'GNU R package "' if ('Title' %in% colnames(pkg$description)) { descr = paste(descr,pkg$description[1,'Title'],sep='') } else { descr = paste(descr,pkg$name,sep='') } if (pkg$is_bundle) { long_descr <- pkg$description[1,'BundleDescription'] } else { long_descr <- pkg$description[1,'Description'] } if (length(long_descr) < 1) { # bypass lintian extended-description-is-empty for which we care not. long_descr <- paste('The author/maintainer of this package' ,'did not care to enter a longer description.') } # using \n\n.\n\n is not very nice, but is necessary to make sure # the longer description does not begin on the synopsis line --- R's # write.dcf does not appear to have a nicer way of doing this. descr = paste(descr,'"\n\n', long_descr, sep='') if ('URL' %in% colnames(pkg$description)) { descr = paste(descr,'\n\nURL: ',pkg$description[1,'URL'],sep='') } control[2,'Description'] = descr # Debian policy says 72 char width; indent minimally write.dcf(control,file=pkg$debfile('control.in'),indent=1,width=72) }