debian-i386

Package		Needs			License		Other
=================================================================================

RESOLVED
---------------------------------------------------------------------------------
matlab					Rice U		added					
rwt		matlab			Rice U		
arrayImpute	matlab
rtiff					tiff + gpl	added
sendplot	rtiff			
BARD					AGPL 		added
DierckxSpline						new version builds
FAiR					AGPL 		added
StatFingerprints tcltk2					now builds
WriteXLS						(many) sysreq ignore added
mlbench					added
adabag		mlbench					
ipred		mlbench					
gWidgetsWWW	Rpad, rebuilt
rgrs		xclip			added alias_run,sysreq
scagnostics				scagnostics license -- added
seewave		flac				    	added alias_run,sysreq			
snpXpert	tcltk2					now builds 
tlnise					tlnise license added
tsModel		tlnise					now builds					
qAnalyst	SuppDists
survcomp	SuppDists
BayesTree						added one-line C++ patch 
HAPim							added one-char DESCRIPTION patch
MatchIt							added one-line patch
race							remove debian/ from source tarball -- fixed in cran2deb	
RJaCGH							contains zlib, added patch to remove it
seqinr							contains zlib, added patch to remove it
rSymPy							small patch for python path
svSocket						small patch re tcl path
rgrs							xclip sysreq/force added
RLadyBug						added patch, now works
dlmap							now works
TSpadi							now works
ash					statlib ?
alphahull						now works
sgeostat						now works

BLACKLISTED 
---------------------------------------------------------------------------------
ADaCGH		tilingArray (BioC)
DAAGbio		limma (BioC ?)
metaMA		limma (BioC ?)
GFMaps		affy (BioC)
GOSim		GO.db (BioC)
Metabonomic	PROcess (BioC ?)
PhViD 		LBE (BioC)
SNPMaP		affxparser, SNPMaP.cdm (BioC)						
SubpathwayMiner KEGG.db (BioC)
gene2pathway    KEGG.db (BioC)
bayesCGH	snapCGH (BioC ?)
classGraph	Rgraphviz (BioC ?)			
gcExplorer	Rgraphviz (BioC ?)											
logilasso	Rgraphviz (BioC ?)
pcalg		Rgraphviz (BioC ?)
qdg		pcalg -> Rgraphviz 
celsius		BioBase (BioC ?)
multtest	BioBase (BioC ?)
hopach		BioBase (BioC ?)
GExMap		multtest (BioC)
LMGene		multtest (BioC)
PCS		multtest (BioC)
crosshybDetector marray (disappread ?)
lsa		Rstem 
mpm		geneplotter (BioC ?)
sisus		annotate, Biobase (BioC ?)

REJECTED
---------------------------------------------------------------------------------------------
gpclib					non-commercial
AIGIS		gpclib			non-commercial
RSurvey		gpclib			non-commercial
aspace		gpclib
tossm		gpclib
spatstat	gpclib
DSpat		spatstat -> gpclib	non-commercial
SGCS		spatstat -> gpclib
arrayMissPattern spatstat -> gpclib
ecespa		spatstat -> gpclib
spatclus	spatstat -> gpclib
CoCo					not-for-profit
gmvalid		CoCo			not-for-profit			
ConCalendar				non-commercial
mclust					non-free
EMCC		mclust
StatDA		mclust
chemometrics	mclust
clValid		mclust
latentnetHRT	mclust
sdcMicro	mclust
vabayelMix	mclust
mclust02				non-free
clustTool	mclust02
clustvarsel	mclust02
mapproj					non-commercial
Geneland	mapproj			non-commercial			
PTAk					non-commercial
SDDA					non-commercial	CSIRO license
optmatch				non-commercial
SpectralGEM	optmatch		non-commercial			
realized				non-commercial
asypow					acm non-commercial
caMassClass				non-commercial
mapproj					non-commercial
rankreg					non-profit
rngwell19937				non-commercial
spatialkernel				gpc library in non-commercial


CANNOT BUILD
----------------------------------------------------------------------------------------------
CarbonEL						Mac OS X only
ROracle							requires Oracle libs
RScaLAPAPCK	licese is free				MPI, Blacs, ScaLAPACK, ...					
Rcplex							CPLEX library 					
Rlsf							LSF required
Rsge							SGE required
VhayuR							Vhauy required
gputools						nvcc (>= 2.1)						
klar							svmlight (non-commercial)
rimage							C++ needs g++ 4.* update
sabreR							contains binary, lintian override ?
svGUI							komodo
wgaim							asreml-r
xgobi							Xgobi

TODO:
---------------------------------------------------------------------------------
aroma.apd						requires aroma.light from BioC
aroma.core						requires aroma.light from BioC
IDPmisc							broken R file (!!)
Rsymphony						build bombs, patch ?, Debian build exists
SuppDists						build bombs, DESCRIPTION needs space, patch added
cmprskContin						fortan95 compiler wants memory model
mvgraph		statDA ?				need pkg-config ?