git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	129	add_ident.out.1	blob \| history \| raw
-rw-r--r--	161	add_ident.out.2	blob \| history \| raw
-rw-r--r--	145	add_ident.out.3	blob \| history \| raw
-rw-r--r--	129	add_ident.out.4	blob \| history \| raw
-rw-r--r--	260	align_seq.out.1	blob \| history \| raw
-rw-r--r--	340	analyze_assembly.out.1	blob \| history \| raw
-rw-r--r--	57	analyze_assembly.out.2	blob \| history \| raw
-rw-r--r--	200	analyze_gc.out.1	blob \| history \| raw
-rw-r--r--	186	analyze_seq.out.1	blob \| history \| raw
-rw-r--r--	252	analyze_vals.out.1	blob \| history \| raw
-rw-r--r--	147	analyze_vals.out.2	blob \| history \| raw
-rw-r--r--	147	analyze_vals.out.3	blob \| history \| raw
-rw-r--r--	4858	assemble_pairs.out.1	blob \| history \| raw
-rw-r--r--	2856	assemble_pairs.out.2	blob \| history \| raw
-rw-r--r--	202	bin_vals.out.1	blob \| history \| raw
-rw-r--r--	202	bin_vals.out.2	blob \| history \| raw
-rw-r--r--	2356	blast_seq.out.1	blob \| history \| raw
-rw-r--r--	6736	blast_seq.out.2	blob \| history \| raw
-rw-r--r--	2883	blast_seq.out.3	blob \| history \| raw
-rw-r--r--	4113	blast_seq.out.4	blob \| history \| raw
-rw-r--r--	83080	blast_seq.out.5	blob \| history \| raw
-rw-r--r--	1695	blast_seq_pair.out.1	blob \| history \| raw
-rw-r--r--	719	blast_seq_pair.out.2	blob \| history \| raw
-rw-r--r--	1555	blast_seq_pair.out.3	blob \| history \| raw
-rw-r--r--	1555	blast_seq_pair.out.4	blob \| history \| raw
-rw-r--r--	3602	blast_seq_pair.out.5	blob \| history \| raw
-rw-r--r--	340	calc_N50.out.1	blob \| history \| raw
-rw-r--r--	12	calc_N50.out.2	blob \| history \| raw
-rw-r--r--	134	calc_bit_scores.out.1	blob \| history \| raw
-rw-r--r--	1027	clip_adaptor.out.1	blob \| history \| raw
-rw-r--r--	324	clip_seq.out.1	blob \| history \| raw
-rw-r--r--	184	complement_seq.out.1	blob \| history \| raw
-rw-r--r--	324	create_seq_index.out.1	blob \| history \| raw
-rw-r--r--	201	digest_seq.out.1	blob \| history \| raw
-rw-r--r--	122	digest_seq.out.2	blob \| history \| raw
-rw-r--r--	122	digest_seq.out.3	blob \| history \| raw
-rw-r--r--	122	digest_seq.out.4	blob \| history \| raw
-rw-r--r--	83	duplicate_record.out.1	blob \| history \| raw
-rw-r--r--	5566	find_SNPs.out.1	blob \| history \| raw
-rw-r--r--	5758	find_SNPs.out.2	blob \| history \| raw
-rw-r--r--	2682	find_adaptor.out.1	blob \| history \| raw
-rw-r--r--	3366	find_adaptor.out.10	blob \| history \| raw
-rw-r--r--	2522	find_adaptor.out.2	blob \| history \| raw
-rw-r--r--	2702	find_adaptor.out.3	blob \| history \| raw
-rw-r--r--	2534	find_adaptor.out.4	blob \| history \| raw
-rw-r--r--	3182	find_adaptor.out.5	blob \| history \| raw
-rw-r--r--	3373	find_adaptor.out.6	blob \| history \| raw
-rw-r--r--	4151	find_adaptor.out.7	blob \| history \| raw
-rw-r--r--	3346	find_adaptor.out.8	blob \| history \| raw
-rw-r--r--	3342	find_adaptor.out.9	blob \| history \| raw
-rw-r--r--	766	find_barcodes.out.1	blob \| history \| raw
-rw-r--r--	950	find_barcodes.out.10	blob \| history \| raw
-rw-r--r--	1228	find_barcodes.out.11	blob \| history \| raw
-rw-r--r--	1498	find_barcodes.out.12	blob \| history \| raw
-rw-r--r--	1137	find_barcodes.out.13	blob \| history \| raw
-rw-r--r--	858	find_barcodes.out.2	blob \| history \| raw
-rw-r--r--	948	find_barcodes.out.3	blob \| history \| raw
-rw-r--r--	766	find_barcodes.out.4	blob \| history \| raw
-rw-r--r--	858	find_barcodes.out.5	blob \| history \| raw
-rw-r--r--	948	find_barcodes.out.6	blob \| history \| raw
-rw-r--r--	858	find_barcodes.out.7	blob \| history \| raw
-rw-r--r--	1043	find_barcodes.out.8	blob \| history \| raw
-rw-r--r--	1223	find_barcodes.out.9	blob \| history \| raw
-rw-r--r--	648	find_gaps.out.1	blob \| history \| raw
-rw-r--r--	780	find_gaps.out.2	blob \| history \| raw
-rw-r--r--	1171	find_homopolymers.out.1	blob \| history \| raw
-rw-r--r--	684	find_homopolymers.out.2	blob \| history \| raw
-rw-r--r--	279	find_homopolymers.out.3	blob \| history \| raw
-rw-r--r--	282	find_homopolymers.out.4	blob \| history \| raw
-rw-r--r--	1712	find_pairs.out.1	blob \| history \| raw
-rw-r--r--	129	get_seq.out.1	blob \| history \| raw
-rw-r--r--	48	get_seq.out.2	blob \| history \| raw
-rw-r--r--	48	get_seq.out.3	blob \| history \| raw
-rw-r--r--	48	get_seq.out.4	blob \| history \| raw
-rw-r--r--	168	get_seq.out.5	blob \| history \| raw
-rw-r--r--	122	grab.out.1	blob \| history \| raw
-rw-r--r--	45	grab.out.10	blob \| history \| raw
-rw-r--r--	135	grab.out.2	blob \| history \| raw
-rw-r--r--	135	grab.out.3	blob \| history \| raw
-rw-r--r--	13	grab.out.4	blob \| history \| raw
-rw-r--r--	93	grab.out.5	blob \| history \| raw
-rw-r--r--	77	grab.out.6	blob \| history \| raw
-rw-r--r--	29	grab.out.7	blob \| history \| raw
-rw-r--r--	45	grab.out.8	blob \| history \| raw
-rw-r--r--	93	grab.out.9	blob \| history \| raw
-rw-r--r--	593	index_vals.out.1	blob \| history \| raw
-rw-r--r--	233	join_seq.out.1	blob \| history \| raw
-rw-r--r--	236	join_seq.out.2	blob \| history \| raw
-rw-r--r--	295	kmer_freq.out.1	blob \| history \| raw
-rw-r--r--	36	length_seq.out.1	blob \| history \| raw
-rw-r--r--	121	length_vals.out.1	blob \| history \| raw
-rw-r--r--	14	lowercase_seq.out.1	blob \| history \| raw
-rw-r--r--	156	mask_seq.out.1	blob \| history \| raw
-rw-r--r--	156	mask_seq.out.2	blob \| history \| raw
-rw-r--r--	156	mask_seq.out.3	blob \| history \| raw
-rw-r--r--	41	max_vals.out.1	blob \| history \| raw
-rw-r--r--	152	max_vals.out.2	blob \| history \| raw
-rw-r--r--	315	mean_scores.out.1	blob \| history \| raw
-rw-r--r--	331	mean_scores.out.2	blob \| history \| raw
-rw-r--r--	333	mean_scores.out.3	blob \| history \| raw
-rw-r--r--	49	mean_vals.out.1	blob \| history \| raw
-rw-r--r--	155	mean_vals.out.2	blob \| history \| raw
-rw-r--r--	49	median_vals.out.1	blob \| history \| raw
-rw-r--r--	161	median_vals.out.2	blob \| history \| raw
-rw-r--r--	1045	merge_pair_seq.out.1	blob \| history \| raw
-rw-r--r--	38	min_vals.out.1	blob \| history \| raw
-rw-r--r--	152	min_vals.out.2	blob \| history \| raw
-rw-r--r--	7701	order_pairs.out.1	blob \| history \| raw
-rw-r--r--	358	patscan_seq.out.1	blob \| history \| raw
-rw-r--r--	468	patscan_seq.out.2	blob \| history \| raw
-rw-r--r--	275	patscan_seq.out.3	blob \| history \| raw
-rw-r--r--	341	patscan_seq.out.4	blob \| history \| raw
-rw-r--r--	257	patscan_seq.out.5	blob \| history \| raw
-rw-r--r--	1036	pcr_seq.out.1	blob \| history \| raw
-rw-r--r--	388	pcr_seq.out.2	blob \| history \| raw
-rw-r--r--	550	pcr_seq.out.3	blob \| history \| raw
-rw-r--r--	550	pcr_seq.out.4	blob \| history \| raw
-rw-r--r--	388	pcr_seq.out.5	blob \| history \| raw
-rw-r--r--	1643	plot_distribution.out.1	blob \| history \| raw
-rw-r--r--	2575	read_454.out.1	blob \| history \| raw
-rw-r--r--	579	read_454.out.2	blob \| history \| raw
-rw-r--r--	1880	read_blast_tab.out.1	blob \| history \| raw
-rw-r--r--	206	read_blast_tab.out.2	blob \| history \| raw
-rw-r--r--	28846	read_embl.out.1	blob \| history \| raw
-rw-r--r--	17929	read_embl.out.2	blob \| history \| raw
-rw-r--r--	5451	read_embl.out.3	blob \| history \| raw
-rw-r--r--	4903	read_embl.out.4	blob \| history \| raw
-rw-r--r--	82	read_fasta.out.1	blob \| history \| raw
-rw-r--r--	41	read_fasta.out.2	blob \| history \| raw
-rw-r--r--	422	read_fastq.out.1	blob \| history \| raw
-rw-r--r--	185	read_fastq.out.2	blob \| history \| raw
-rw-r--r--	237	read_fastq.out.3	blob \| history \| raw
-rw-r--r--	5970	read_fastq.out.4	blob \| history \| raw
-rw-r--r--	20142	read_genbank.out.1	blob \| history \| raw
-rw-r--r--	13889	read_genbank.out.2	blob \| history \| raw
-rw-r--r--	5217	read_genbank.out.3	blob \| history \| raw
-rw-r--r--	4921	read_genbank.out.4	blob \| history \| raw
-rw-r--r--	6989	read_sff.out.1	blob \| history \| raw
-rw-r--r--	723	read_sff.out.2	blob \| history \| raw
-rw-r--r--	723	read_sff.out.3	blob \| history \| raw
-rw-r--r--	713	read_sff.out.4	blob \| history \| raw
-rw-r--r--	177	read_tab.out.1	blob \| history \| raw
-rw-r--r--	137	read_tab.out.2	blob \| history \| raw
-rw-r--r--	177	read_tab.out.3	blob \| history \| raw
-rw-r--r--	101	read_tab.out.4	blob \| history \| raw
-rw-r--r--	117	read_tab.out.5	blob \| history \| raw
-rw-r--r--	197	read_tab.out.6	blob \| history \| raw
-rw-r--r--	53	read_tab.out.7	blob \| history \| raw
-rw-r--r--	197	read_tab.out.8	blob \| history \| raw
-rw-r--r--	305	remove_indel_columns.out.1	blob \| history \| raw
-rw-r--r--	64	remove_indels.out.1	blob \| history \| raw
-rw-r--r--	16	remove_keys.out.1	blob \| history \| raw
-rw-r--r--	555	remove_primers.out.1	blob \| history \| raw
-rw-r--r--	65	rename_keys.out.1	blob \| history \| raw
-rw-r--r--	122	replace_vals.out.1	blob \| history \| raw
-rw-r--r--	122	replace_vals.out.2	blob \| history \| raw
-rw-r--r--	122	replace_vals.out.3	blob \| history \| raw
-rw-r--r--	184	reverse_seq.out.1	blob \| history \| raw
-rw-r--r--	377	scores_to_dec.out.1	blob \| history \| raw
-rw-r--r--	110	shred_seq.out.1	blob \| history \| raw
-rw-r--r--	96	sort_records.out.1	blob \| history \| raw
-rw-r--r--	96	sort_records.out.2	blob \| history \| raw
-rw-r--r--	96	sort_records.out.3	blob \| history \| raw
-rw-r--r--	804	split_pair_seq.out.1	blob \| history \| raw
-rw-r--r--	258	substitute_vals.out.1	blob \| history \| raw
-rw-r--r--	264	substitute_vals.out.2	blob \| history \| raw
-rw-r--r--	261	substitute_vals.out.3	blob \| history \| raw
-rw-r--r--	247	substitute_vals.out.4	blob \| history \| raw
-rw-r--r--	252	substitute_vals.out.5	blob \| history \| raw
-rw-r--r--	42	sum_vals.out.1	blob \| history \| raw
-rw-r--r--	154	sum_vals.out.2	blob \| history \| raw
-rw-r--r--	34	swapcase_seq.out.1	blob \| history \| raw
-rw-r--r--	393	translate_seq.out.1	blob \| history \| raw
-rw-r--r--	131	translate_seq.out.2	blob \| history \| raw
-rw-r--r--	69	transliterate_seq.out.1	blob \| history \| raw
-rw-r--r--	66	transliterate_seq.out.2	blob \| history \| raw
-rw-r--r--	69	transliterate_vals.out.1	blob \| history \| raw
-rw-r--r--	67	transliterate_vals.out.2	blob \| history \| raw
-rw-r--r--	170	trim_seq.out.1	blob \| history \| raw
-rw-r--r--	160	trim_seq.out.2	blob \| history \| raw
-rw-r--r--	170	trim_seq.out.3	blob \| history \| raw
-rw-r--r--	170	trim_seq.out.4	blob \| history \| raw
-rw-r--r--	210	trim_seq.out.5	blob \| history \| raw
-rw-r--r--	130	trim_seq.out.6	blob \| history \| raw
-rw-r--r--	840	uclust_seq.out.1	blob \| history \| raw
-rw-r--r--	838	uclust_seq.out.2	blob \| history \| raw
-rw-r--r--	840	uclust_seq.out.3	blob \| history \| raw
-rw-r--r--	76	uniq_seq.out.1	blob \| history \| raw
-rw-r--r--	38	uniq_seq.out.2	blob \| history \| raw
-rw-r--r--	179	uniq_vals.out.1	blob \| history \| raw
-rw-r--r--	140	uniq_vals.out.2	blob \| history \| raw
-rw-r--r--	14	uppercase_seq.out.1	blob \| history \| raw
-rw-r--r--	82	write_blast.out.1	blob \| history \| raw
-rw-r--r--	225	write_blast.out.2	blob \| history \| raw
-rw-r--r--	82	write_blast.out.3	blob \| history \| raw
-rw-r--r--	15	write_fasta.out.1	blob \| history \| raw
-rw-r--r--	16	write_fasta.out.2	blob \| history \| raw
-rw-r--r--	16	write_fasta.out.3	blob \| history \| raw
drwxr-xr-x	-	write_fasta_files.out.1	tree \| history
drwxr-xr-x	-	write_fasta_files.out.2	tree \| history
-rw-r--r--	95	write_fastq.out.1	blob \| history \| raw
-rw-r--r--	95	write_fastq.out.2	blob \| history \| raw
drwxr-xr-x	-	write_fastq_files.out.1	tree \| history
drwxr-xr-x	-	write_fastq_files.out.2	tree \| history
-rw-r--r--	73	write_tab.out.1	blob \| history \| raw
-rw-r--r--	98	write_tab.out.2	blob \| history \| raw
-rw-r--r--	73	write_tab.out.3	blob \| history \| raw
-rw-r--r--	73	write_tab.out.4	blob \| history \| raw
-rw-r--r--	20	write_tab.out.5	blob \| history \| raw
-rw-r--r--	53	write_tab.out.6	blob \| history \| raw