git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	69	add_ident.in	blob \| history \| raw
-rw-r--r--	245	align_seq.in	blob \| history \| raw
-rw-r--r--	340	analyze_assembly.in	blob \| history \| raw
-rw-r--r--	112	analyze_gc.in	blob \| history \| raw
-rw-r--r--	52	analyze_seq.in	blob \| history \| raw
-rw-r--r--	61	analyze_vals.in	blob \| history \| raw
-rw-r--r--	5762	assemble_pairs.in	blob \| history \| raw
-rw-r--r--	101	bin_vals.in	blob \| history \| raw
-rw-r--r--	8887	blast_seq.in.1	blob \| history \| raw
-rw-r--r--	1134	blast_seq.in.2	blob \| history \| raw
-rw-r--r--	6052	blast_seq.in.3	blob \| history \| raw
-rw-r--r--	565	blast_seq.in.4	blob \| history \| raw
-rw-r--r--	1524	blast_seq_pair.in.1	blob \| history \| raw
-rw-r--r--	542	blast_seq_pair.in.2	blob \| history \| raw
-rw-r--r--	1033	blast_seq_pair.in.3	blob \| history \| raw
-rw-r--r--	1033	blast_seq_pair.in.4	blob \| history \| raw
-rw-r--r--	340	calc_N50.in	blob \| history \| raw
-rw-r--r--	260	calc_bit_scores.in	blob \| history \| raw
-rw-r--r--	1272	clip_adaptor.in	blob \| history \| raw
-rw-r--r--	372	clip_seq.in	blob \| history \| raw
-rw-r--r--	184	complement_seq.in	blob \| history \| raw
-rw-r--r--	4961	create_blast_index.in.1	blob \| history \| raw
-rw-r--r--	6052	create_blast_index.in.2	blob \| history \| raw
-rw-r--r--	413	create_seq_index.in	blob \| history \| raw
-rw-r--r--	80	digest_seq.in	blob \| history \| raw
-rw-r--r--	133	duplicate_record.in	blob \| history \| raw
-rw-r--r--	3871	find_SNPs.in	blob \| history \| raw
-rw-r--r--	2202	find_adaptor.in	blob \| history \| raw
-rw-r--r--	674	find_barcodes.in.1	blob \| history \| raw
-rw-r--r--	16	find_barcodes.in.2	blob \| history \| raw
-rw-r--r--	513	find_gaps.in	blob \| history \| raw
-rw-r--r--	183	find_homopolymers.in	blob \| history \| raw
-rw-r--r--	7305	find_pairs.in	blob \| history \| raw
-rw-r--r--	413	get_seq.in.1	blob \| history \| raw
-rw-r--r--	102	get_seq.in.2	blob \| history \| raw
-rw-r--r--	135	grab.in	blob \| history \| raw
-rw-r--r--	10	grab.in.pat	blob \| history \| raw
-rw-r--r--	463	index_vals.in	blob \| history \| raw
-rw-r--r--	164	join_seq.in	blob \| history \| raw
-rw-r--r--	75	kmer_freq.in	blob \| history \| raw
-rw-r--r--	24	length_seq.in	blob \| history \| raw
-rw-r--r--	61	length_vals.in	blob \| history \| raw
-rw-r--r--	14	lowercase_seq.in	blob \| history \| raw
-rw-r--r--	156	mask_seq.in	blob \| history \| raw
-rw-r--r--	113	max_vals.in	blob \| history \| raw
-rw-r--r--	261	mean_scores.in	blob \| history \| raw
-rw-r--r--	113	mean_vals.in	blob \| history \| raw
-rw-r--r--	113	median_vals.in	blob \| history \| raw
-rw-r--r--	1340	merge_pair_seq.in	blob \| history \| raw
-rw-r--r--	113	min_vals.in	blob \| history \| raw
-rw-r--r--	7305	order_pairs.in	blob \| history \| raw
-rw-r--r--	141	patscan_seq.in.1	blob \| history \| raw
-rw-r--r--	122	patscan_seq.in.2	blob \| history \| raw
-rw-r--r--	388	pcr_seq.in	blob \| history \| raw
-rw-r--r--	12543	plot_distribution.in	blob \| history \| raw
-rw-r--r--	1230	read_454.in	blob \| history \| raw
-rw-r--r--	491	read_454.in.gz	blob \| history \| raw
-rw-r--r--	3496	read_454.in.qual	blob \| history \| raw
-rw-r--r--	659	read_454.in.qual.gz	blob \| history \| raw
-rw-r--r--	907	read_blast_tab.in	blob \| history \| raw
-rw-r--r--	12140	read_embl.in	blob \| history \| raw
-rw-r--r--	4573	read_embl.in.gz	blob \| history \| raw
-rw-r--r--	24	read_fasta.in	blob \| history \| raw
-rw-r--r--	45	read_fasta.in.gz	blob \| history \| raw
-rw-r--r--	350	read_fastq.in.1	blob \| history \| raw
-rw-r--r--	148	read_fastq.in.1.gz	blob \| history \| raw
-rw-r--r--	149	read_fastq.in.2	blob \| history \| raw
-rw-r--r--	2800	read_fastq.in.3	blob \| history \| raw
-rw-r--r--	2800	read_fastq.in.4	blob \| history \| raw
-rw-r--r--	10541	read_genbank.in	blob \| history \| raw
-rw-r--r--	4379	read_genbank.in.gz	blob \| history \| raw
-rw-r--r--	17512	read_sff.in	blob \| history \| raw
-rw-r--r--	141	read_tab.in.1	blob \| history \| raw
-rw-r--r--	142	read_tab.in.2	blob \| history \| raw
-rw-r--r--	98	read_tab.in.3	blob \| history \| raw
-rw-r--r--	325	remove_indel_columns.in	blob \| history \| raw
-rw-r--r--	83	remove_indels.in	blob \| history \| raw
-rw-r--r--	65	remove_keys.in	blob \| history \| raw
-rw-r--r--	492	remove_primers.in	blob \| history \| raw
-rw-r--r--	65	rename_keys.in	blob \| history \| raw
-rw-r--r--	124	replace_vals.in.1	blob \| history \| raw
-rw-r--r--	26	replace_vals.in.2	blob \| history \| raw
-rw-r--r--	184	reverse_seq.in	blob \| history \| raw
-rw-r--r--	107	scores_to_dec.in	blob \| history \| raw
-rw-r--r--	55	shred_seq.in	blob \| history \| raw
-rw-r--r--	96	sort_records.in	blob \| history \| raw
-rw-r--r--	627	split_pair_seq.in	blob \| history \| raw
-rw-r--r--	264	substitute_vals.in	blob \| history \| raw
-rw-r--r--	113	sum_vals.in	blob \| history \| raw
-rw-r--r--	34	swapcase_seq.in	blob \| history \| raw
-rw-r--r--	82	translate_seq.in	blob \| history \| raw
-rw-r--r--	69	transliterate_seq.in	blob \| history \| raw
-rw-r--r--	69	transliterate_vals.in	blob \| history \| raw
-rw-r--r--	210	trim_seq.in	blob \| history \| raw
-rw-r--r--	694	uclust_seq.in	blob \| history \| raw
-rw-r--r--	123	uniq_seq.in	blob \| history \| raw
-rw-r--r--	319	uniq_vals.in	blob \| history \| raw
-rw-r--r--	14	uppercase_seq.in	blob \| history \| raw
-rw-r--r--	206	write_blast.in	blob \| history \| raw
-rw-r--r--	44	write_fasta.in	blob \| history \| raw
-rw-r--r--	164	write_fasta_files.in	blob \| history \| raw
-rw-r--r--	131	write_fastq.in	blob \| history \| raw
-rw-r--r--	491	write_fastq_files.in	blob \| history \| raw
-rw-r--r--	197	write_tab.in	blob \| history \| raw