From fe96759f8f0cbc43b1b6965ee638c5415ef48c48 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Mon, 6 May 2013 09:17:39 +0000 Subject: [PATCH] fixed QA_Illumina_report.rb encoding git-svn-id: http://biopieces.googlecode.com/svn/trunk@2169 74ccb610-7750-0410-82ae-013aeee3265d --- bp_scripts/QA_Illumina_report.rb | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb index 420294c..6e0ba0a 100755 --- a/bp_scripts/QA_Illumina_report.rb +++ b/bp_scripts/QA_Illumina_report.rb @@ -66,7 +66,7 @@ scores_bin_file = File.join(tmpdir, 'scores_bin.png') STDERR.puts "Analyzing sequences ... " system( - "read_fastq -e illumina1.8 -i #{seq_file} | + "read_fastq -e base_33 -i #{seq_file} | progress_meter | analyze_vals -k SEQ -o #{analyze_vals_file} | trim_seq -l 3 -m 25 | -- 2.39.2