git.donarmstrong.com Git - biopieces.git/history

]> git.donarmstrong.com Git - biopieces.git/history - code_perl

2013-11-25	martinahansen	fixed encoding bug in read_454	tree \| commitdiff
2013-04-29	martinahansen	fixed missing BP_TMP dir feature	tree \| commitdiff
2013-03-16	martinahansen	changed upper/lower case output in assemble_pairs	tree \| commitdiff
2013-01-14	martinahansen	fixed apparent change in Carp yielding an extra . after...	tree \| commitdiff
2012-10-10	martinahansen	added some file locking to Biopieces.pm	tree \| commitdiff
2012-04-30	martinahansen	upgraded write_fixedstep	tree \| commitdiff
2011-11-17	martinahansen	fixed bug in grab	tree \| commitdiff
2011-11-17	martinahansen	fixed stupid windows \r bug in Patscan::read_patterns	tree \| commitdiff
2011-11-09	martinahansen	added Backtrack.pm	tree \| commitdiff
2011-10-05	martinahansen	cleanup	tree \| commitdiff
2011-09-23	martinahansen	fixed patscan_seq	tree \| commitdiff
2011-05-30	martinahansen	upgraded mean_scores	tree \| commitdiff
2011-05-10	martinahansen	added fix for negative 454 decimal values	tree \| commitdiff
2011-04-11	martinahansen	prettyfied gnuplots	tree \| commitdiff
2011-04-11	martinahansen	added persist to gnuplot commands	tree \| commitdiff
2011-01-17	martinahansen	fixed bug in Fasta.pm	tree \| commitdiff
2011-01-12	martinahansen	posished Calc::standard_deviation	tree \| commitdiff
2011-01-03	martinahansen	misq updates	tree \| commitdiff
2010-11-14	martinahansen	adding 00README file to code_ruby dir	tree \| commitdiff
2010-10-13	martinahansen	removed local logging causing trouble	tree \| commitdiff
2010-10-13	martinahansen	fixed SAM.pm qual scores from phred-33 to phred-64	tree \| commitdiff
2010-09-28	martinahansen	AlignTwoSeq.pm briefly revisited	tree \| commitdiff
2010-09-28	martinahansen	fixed indentation in perl code	tree \| commitdiff
2010-09-08	martinahansen	fixed minor bug in write_align of pairwise protein...	tree \| commitdiff
2010-06-30	martinahansen	added trim_seq	tree \| commitdiff
2010-06-29	martinahansen	added biopieces mean_scores	tree \| commitdiff
2010-06-28	martinahansen	added ID to SCORE alias in KISS.pm	tree \| commitdiff
2010-06-22	martinahansen	corrected type in log messages	tree \| commitdiff
2010-06-17	martinahansen	added fixedstep biopieces	tree \| commitdiff
2010-06-16	martinahansen	schrubbing UCSC.pm code	tree \| commitdiff
2010-06-16	martinahansen	fixed s/Common/Filesys/ renaming in UCSC.pm	tree \| commitdiff
2010-05-20	martinahansen	added solexa_str_mean to read_454	tree \| commitdiff
2010-05-19	martinahansen	added read_454 and write_454 (and ruby stuff)	tree \| commitdiff
2010-05-11	martinahansen	fixed bug in write_fixedstep	tree \| commitdiff
2010-04-27	martinahansen	fixed speed issue with track_ruler in BGB	tree \| commitdiff
2010-04-26	martinahansen	optimized track_ruler in BGB	tree \| commitdiff
2010-03-22	martinahansen	ugly fix of BGB ladder problem	tree \| commitdiff
2010-03-22	martinahansen	fixing ladder bug in BGB	tree \| commitdiff
2010-03-19	martinahansen	added PDF/SVG export to BGB	tree \| commitdiff
2010-03-19	martinahansen	added grid to BGB	tree \| commitdiff
2010-03-18	martinahansen	added collapsable tracks to BGB	tree \| commitdiff
2010-03-18	martinahansen	BGB cleanup	tree \| commitdiff
2010-03-18	martinahansen	error handling and seq guess fix	tree \| commitdiff
2010-03-13	martinahansen	changed BGB session format to JSON	tree \| commitdiff
2010-03-05	martinahansen	layout of wiggle improved	tree \| commitdiff
2010-03-05	martinahansen	wiggle tracks display - almost there	tree \| commitdiff
2010-03-05	martinahansen	fixing wiggle tracks in BGB	tree \| commitdiff
2010-03-04	martinahansen	reworked list_inflate/deflate	tree \| commitdiff
2010-03-04	martinahansen	chasing wiggle bug	tree \| commitdiff
2010-03-03	martinahansen	fixed bug in list_deflate	tree \| commitdiff
2010-03-02	martinahansen	fixed bug in Seq.pm	tree \| commitdiff
2010-03-02	martinahansen	cleaned up BGB track code	tree \| commitdiff
2010-03-02	martinahansen	merged BGB::Common.pm to BGB::Track.pm	tree \| commitdiff
2010-03-01	martinahansen	added wiggle to BGB	tree \| commitdiff
2010-03-01	martinahansen	added wiggle to BGB	tree \| commitdiff
2010-02-11	martinahansen	fixed issue in KISS.pm but more found	tree \| commitdiff
2010-02-10	martinahansen	fixed feature width issue	tree \| commitdiff
2010-02-10	martinahansen	added arrows to BGB	tree \| commitdiff
2010-02-09	martinahansen	added color routine to Draw.pm	tree \| commitdiff
2010-02-09	martinahansen	moving back to binned index and using JSON for storing	tree \| commitdiff
2010-02-09	martinahansen	changed kiss score to bit_score instead of eval	tree \| commitdiff
2010-02-06	martinahansen	added search function to NClist.pm	tree \| commitdiff
2010-02-06	martinahansen	fixed BGB search function	tree \| commitdiff
2010-02-06	martinahansen	debugging search function in NClists.pm	tree \| commitdiff
2010-02-06	martinahansen	added search function to NClist.pm	tree \| commitdiff
2010-02-06	martinahansen	shifted to NC list in BGB	tree \| commitdiff
2010-02-05	martinahansen	fixed bugs in BGB	tree \| commitdiff
2010-02-03	martinahansen	added NClist.pm	tree \| commitdiff
2010-01-29	martinahansen	changed sorting in BGB	tree \| commitdiff
2010-01-28	martinahansen	repair on plot_karyogram	tree \| commitdiff
2010-01-28	martinahansen	repair on plot_karyogram	tree \| commitdiff
2010-01-26	martinahansen	fixed a number of issues - grave bug in complement_seq!	tree \| commitdiff
2010-01-24	martinahansen	cleanup BGB stuff	tree \| commitdiff
2010-01-19	martinahansen	fixed strand bug in SAM.pm	tree \| commitdiff
2010-01-05	martinahansen	cleanup of BGB	tree \| commitdiff
2009-12-17	martinahansen	simplified BGB index scheme	tree \| commitdiff
2009-12-16	martinahansen	todo fixes	tree \| commitdiff
2009-12-15	martinahansen	added track label to search function in BGB	tree \| commitdiff
2009-12-15	martinahansen	fixed upload pipe	tree \| commitdiff
2009-12-15	martinahansen	this is the index we want from xeon	tree \| commitdiff
2009-12-14	martinahansen	added BGB_list	tree \| commitdiff
2009-12-14	martinahansen	renaming BBrowser to BGB	tree \| commitdiff
2009-12-14	martinahansen	replacing Bbrowser with BGB	tree \| commitdiff
2009-12-14	martinahansen	added kiss_intersect	tree \| commitdiff
2009-12-08	martinahansen	added read_ace	tree \| commitdiff
2009-12-08	martinahansen	added login to browser	tree \| commitdiff
2009-12-04	martinahansen	added file_md5 routine to Filesys.pm	tree \| commitdiff
2009-12-03	martinahansen	added space between liniea track elements	tree \| commitdiff
2009-12-03	martinahansen	fixed inline PNG in Bbrowser	tree \| commitdiff
2009-12-02	martinahansen	implemented search function in bbrowser	tree \| commitdiff
2009-12-01	martinahansen	added DB.pm	tree \| commitdiff
2009-12-01	martinahansen	added DB.pm	tree \| commitdiff
2009-12-01	martinahansen	set bbrowser and GFF to 0-base	tree \| commitdiff
2009-12-01	martinahansen	renamed KISS browser to Biopiece browser	tree \| commitdiff
2009-11-27	martinahansen	added dna export to browser	tree \| commitdiff
2009-11-26	martinahansen	cleaned BBrowser::Tracks.pm	tree \| commitdiff
2009-11-26	martinahansen	Cleaned BBrowser::Draw	tree \| commitdiff
2009-11-26	martinahansen	cleaned KISS.pm	tree \| commitdiff
2009-11-26	martinahansen	removed KISS directory	tree \| commitdiff
2009-11-25	martinahansen	more KISS	tree \| commitdiff
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