From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Mon, 7 Oct 2013 08:40:53 +0000 (+0000)
Subject: fixed symlink flaw in file type detection
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=d853435e09acb0ff7123b03c711eaf66073ee900

fixed symlink flaw in file type detection

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2224 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/filesys.rb b/code_ruby/lib/maasha/filesys.rb
index 4f58898..cee9e22 100644
--- a/code_ruby/lib/maasha/filesys.rb
+++ b/code_ruby/lib/maasha/filesys.rb
@@ -61,7 +61,7 @@ class Filesys
       if file == '-'
         ios = STDIN
       else
-        case `file #{file}`
+        case `file -L #{file}`
         when /gzip/
           ios = Zlib::GzipReader.new File.open(file, mode, options)
         when /bzip/