From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Wed, 12 Dec 2012 08:33:01 +0000 (+0000)
Subject: changed to new find_adaptor
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=d72b568061e47185b9d68eabe2b09a0d55fbed20

changed to new find_adaptor

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2043 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index f5b426f..d502385 100755
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -72,7 +72,7 @@ system(
    trim_seq -l 3 -m 25 |
    grab -e 'SEQ_LEN > 0' |
    analyze_vals -k SEQ -o #{analyze_vals_trim_file} |
-   find_adaptor -c 12 -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
+   find_adaptor -l 6 -L 6 -f ACACGACGCTCTTCCGATCT -r AGATCGGAAGAGCACACGTC |
    clip_adaptor |
    grab -e 'SEQ_LEN > 0' |
    analyze_vals -k SEQ -o #{analyze_vals_trim_noadapt_file} |