From: martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Date: Fri, 18 Oct 2013 13:01:02 +0000 (+0000)
Subject: fixed method name change
X-Git-Url: https://git.donarmstrong.com/?p=biopieces.git;a=commitdiff_plain;h=a80169a9121e8537f169cd85010d2ceae3a8d4fd

fixed method name change

git-svn-id: http://biopieces.googlecode.com/svn/trunk@2242 74ccb610-7750-0410-82ae-013aeee3265d
---

diff --git a/code_ruby/lib/maasha/sam.rb b/code_ruby/lib/maasha/sam.rb
index 14a910f..8772e63 100644
--- a/code_ruby/lib/maasha/sam.rb
+++ b/code_ruby/lib/maasha/sam.rb
@@ -76,7 +76,7 @@ class Sam < Filesys
     bp[:SEQ]      = sam[:SEQ].seq
 
     unless sam[:SEQ].qual.nil?
-      bp[:SCORES] = sam[:SEQ].convert_phred2illumina!.qual
+      bp[:SCORES] = sam[:SEQ].qual_convert!(:base_33, :base_64).qual
     end
 
     if sam[:NM] and sam[:NM].to_i > 0